Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_I22
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   168   1e-42
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   167   1e-42
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    26   7.9  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  168 bits (408), Expect = 1e-42
 Identities = 78/152 (51%), Positives = 101/152 (66%)
 Frame = +2

Query: 89  LKLQXRLAASVMRCGXKXVWLDPNXINEXANTNSRQXIRKXXKXGLVIKXPVAVHSRARV 268
           L+ Q RLAASV++CG + VW+DPN I+E +N NSRQ IRK  K GLVI+ P  +HSR R+
Sbjct: 4   LRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRI 63

Query: 269 RKNTEARRKGRHCGFGKXXGTANARMPQKELWXXXXXXXXXXXXXYXTAKKIDRHLYHSL 448
           RK   A+R GRH G+GK  GTA ARMP   +W             Y  + KID+HLYH+L
Sbjct: 64  RKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTL 123

Query: 449 YMKAKGNVFXNXRVLMEYXHRKKAEKARTKML 544
           Y++AKGN F + R L+E+  R KAE  RTK++
Sbjct: 124 YLEAKGNTFKHKRALIEHIQRAKAEANRTKLI 155


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  167 bits (407), Expect = 1e-42
 Identities = 77/152 (50%), Positives = 101/152 (66%)
 Frame = +2

Query: 89  LKLQXRLAASVMRCGXKXVWLDPNXINEXANTNSRQXIRKXXKXGLVIKXPVAVHSRARV 268
           L+ Q RLAASV++CG + VW+DPN I+E +N NSRQ +RK  K GLVI+ P  +HSR R+
Sbjct: 4   LRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRI 63

Query: 269 RKNTEARRKGRHCGFGKXXGTANARMPQKELWXXXXXXXXXXXXXYXTAKKIDRHLYHSL 448
           RK   A+R GRH G+GK  GTA ARMP   +W             Y  + KID+HLYH+L
Sbjct: 64  RKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTL 123

Query: 449 YMKAKGNVFXNXRVLMEYXHRKKAEKARTKML 544
           Y++AKGN F + R L+E+  R KAE  RTK++
Sbjct: 124 YLEAKGNTFKHKRALIEHIQRAKAEANRTKLI 155


>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 335 WXYXXSYQSHSDDPFYVLLCFCGHERGS 252
           W     Y+S   D FY ++ F  H RGS
Sbjct: 824 WGETMVYESIISDDFYSMIRFLVHHRGS 851


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,992,297
Number of Sequences: 5004
Number of extensions: 26085
Number of successful extensions: 35
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)