Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_I22
         (858 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   177   6e-45
Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical pr...    28   9.8  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  177 bits (432), Expect = 6e-45
 Identities = 81/153 (52%), Positives = 103/153 (67%)
 Frame = +2

Query: 89  LKLQXRLAASVMRCGXKXVWLDPNXINEXANTNSRQXIRKXXKXGLVIKXPVAVHSRARV 268
           L+LQ RLA++V++CG   VWLDPN ++E +  NSRQ IR+    GL+I+ PV VHSR R 
Sbjct: 4   LRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSRFRA 63

Query: 269 RKNTEARRKGRHCGFGKXXGTANARMPQKELWXXXXXXXXXXXXXYXTAKKIDRHLYHSL 448
           R+  EARRKGRH G+GK  GTANARMP+K LW             Y  AKK+D+HLYH L
Sbjct: 64  REYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHEL 123

Query: 449 YMKAKGNVFXNXRVLMEYXHRKKAEKARTKMLS 547
           Y++AKGN F N + L+EY  +KK E  R K L+
Sbjct: 124 YLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLA 156


>Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical
           protein F15D3.2 protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 626 PPSWRQYVPRGACXPP 579
           P SW QY P+G C  P
Sbjct: 221 PNSWHQYQPKGTCIQP 236


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,583,657
Number of Sequences: 27780
Number of extensions: 164390
Number of successful extensions: 234
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)