Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_I18
         (858 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0099 + 12343518-12343678,12344193-12344393,12344669-123448...    29   4.7  
11_04_0442 - 17790811-17790889,17791047-17791114,17791144-177911...    29   6.3  

>08_02_0099 +
           12343518-12343678,12344193-12344393,12344669-12344846,
           12347201-12347463,12347596-12347874,12348045-12349182,
           12349303-12349473
          Length = 796

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 453 LRXXCVYPRQYAGACPVCPERCFAPSVPNGSCNA 554
           L   CV+   +   C  CP    APS PNG+C++
Sbjct: 377 LTSCCVFGLPWLAPCRPCPT-AGAPSPPNGTCHS 409


>11_04_0442 - 17790811-17790889,17791047-17791114,17791144-17791166,
            17791210-17795913,17797414-17797624,17798478-17798666
          Length = 1757

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 289  KDNPDWSAAVQNFKTTCLSDSLKPQGR*YELSCVRHYTLCSDQLYQIR 432
            KDN  ++  + NFK +  S ++ P+     L C+RH   C D + ++R
Sbjct: 980  KDN--YNLVINNFKFS--STAITPEATILILKCIRHVRSCDDFVNKLR 1023


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,601,933
Number of Sequences: 37544
Number of extensions: 246831
Number of successful extensions: 638
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)