Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_I18
         (858 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr...    30   2.4  
Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical pr...    30   2.4  

>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
           protein T01D3.3b protein.
          Length = 1011

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 5/35 (14%)
 Frame = +3

Query: 465 CVYPRQYA--GAC-PVCPERCFAPSVP--NGSCNA 554
           CV P ++A   +C  +CPE C  PSVP  +G+C+A
Sbjct: 780 CVCPDKHAVWSSCGTLCPEYCGQPSVPVCSGTCSA 814


>Z81110-2|CAB03259.1|  802|Caenorhabditis elegans Hypothetical
           protein T01D3.3a protein.
          Length = 802

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 5/35 (14%)
 Frame = +3

Query: 465 CVYPRQYA--GAC-PVCPERCFAPSVP--NGSCNA 554
           CV P ++A   +C  +CPE C  PSVP  +G+C+A
Sbjct: 571 CVCPDKHAVWSSCGTLCPEYCGQPSVPVCSGTCSA 605


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,290,377
Number of Sequences: 27780
Number of extensions: 203737
Number of successful extensions: 464
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)