Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_I15
(889 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 38 0.002
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.29
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 0.95
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 1.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 2.7
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.6
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 23 9.0
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 37.9 bits (84), Expect = 0.002
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = -3
Query: 497 PKXXPPXPPXXXVFXXPKXPPPPPPXXKXKKK 402
P PP PP F P PPPPPP KK+
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKR 36
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.29
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 485 PPXPPXXXVFXXPKXPPPPPP 423
PP PP P PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783
Score = 29.1 bits (62), Expect = 0.88
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 485 PPXPPXXXVFXXPKXPPPPPP 423
PP PP V PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/48 (33%), Positives = 16/48 (33%), Gaps = 4/48 (8%)
Frame = +2
Query: 698 PPPPXXXXKXXXPXXXGGPPXXXKKXXGXPPXXPP----XGPPXXPTP 829
PPPP P PP PP PP GPP P P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/45 (35%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Frame = -3
Query: 557 PXPPPXXRAPGFFXGKXXXXPKXXP-PXPPXXXVFXXPKXPPPPP 426
P PPP P P P P PP + P PPPPP
Sbjct: 733 PPPPPAVIVP---------TPAPAPIPVPPPAPIMGGPPPPPPPP 768
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 24.6 bits (51), Expect(2) = 0.95
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 440 PPPPPPXXKXKKK 402
PPPPPP + +KK
Sbjct: 1096 PPPPPPPAEVEKK 1108
Score = 22.6 bits (46), Expect(2) = 0.95
Identities = 9/21 (42%), Positives = 9/21 (42%)
Frame = -3
Query: 485 PPXPPXXXVFXXPKXPPPPPP 423
P P V PPPPPP
Sbjct: 1080 PSAPVANNVSKPSAVPPPPPP 1100
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 28.7 bits (61), Expect = 1.2
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = +2
Query: 698 PPPPXXXXKXXXPXXXGGPPXXXKKXXGXPPXXPPXGPPXXPTP 829
P P P G P K G PP PP P P P
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKP 1203
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = +2
Query: 698 PPPPXXXXKXXXPXXXGGPPXXXKKXXGXPPXXPPXGPPXXPTP 829
PP P P K G PP PP P PTP
Sbjct: 1179 PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
Score = 27.1 bits (57), Expect = 3.6
Identities = 17/60 (28%), Positives = 17/60 (28%)
Frame = +2
Query: 698 PPPPXXXXKXXXPXXXGGPPXXXKKXXGXPPXXPPXGPPXXPTPGXXXXXGXPFXPXGGG 877
PP P P PP K G P PP P P G P P G
Sbjct: 1032 PPIPVPSTAPPVPIPTSTPPVP-KSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSG 1090
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/44 (29%), Positives = 13/44 (29%)
Frame = +2
Query: 698 PPPPXXXXKXXXPXXXGGPPXXXKKXXGXPPXXPPXGPPXXPTP 829
PP P G P K PP P G P P P
Sbjct: 1121 PPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKP 1164
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/44 (29%), Positives = 13/44 (29%)
Frame = +2
Query: 698 PPPPXXXXKXXXPXXXGGPPXXXKKXXGXPPXXPPXGPPXXPTP 829
PP P G P K PP P G P P P
Sbjct: 1102 PPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKP 1145
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/44 (29%), Positives = 13/44 (29%)
Frame = +2
Query: 698 PPPPXXXXKXXXPXXXGGPPXXXKKXXGXPPXXPPXGPPXXPTP 829
PP P P P K PP P G P P P
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKP 1126
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.5 bits (58), Expect = 2.7
Identities = 20/76 (26%), Positives = 21/76 (27%), Gaps = 11/76 (14%)
Frame = -3
Query: 617 PGXXPXXXEXPXTPL*XXXNPXPPPXX-----------RAPGFFXGKXXXXPKXXPPXPP 471
P P P T L NP PPP P + PP
Sbjct: 169 PSFQPPSAAAPATSLPSDYNPPPPPPPPPAVEDQAADANEPDDYYSSGRAVSPEIPPTYT 228
Query: 470 XXXVFXXPKXPPPPPP 423
P PPPPPP
Sbjct: 229 PKQADPLPAPPPPPPP 244
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/45 (31%), Positives = 14/45 (31%)
Frame = +2
Query: 698 PPPPXXXXKXXXPXXXGGPPXXXKKXXGXPPXXPPXGPPXXPTPG 832
PPPP P PP PP P P P PG
Sbjct: 1707 PPPPPMSV----PPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747
Score = 26.2 bits (55), Expect = 6.2
Identities = 13/46 (28%), Positives = 14/46 (30%)
Frame = -2
Query: 357 PKNPXXPPFSXKNXFXPPLXXXXXPXPPNFFXXXXPXXPPXXXNPP 220
P +P P PP P PP P PP PP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPP 1728
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/52 (30%), Positives = 16/52 (30%), Gaps = 7/52 (13%)
Frame = -3
Query: 557 PXPPPXXRAPGFFXGKXXXXPKXXPPX-------PPXXXVFXXPKXPPPPPP 423
P PPP R P PP PP PPPPPP
Sbjct: 291 PLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 23.0 bits (47), Expect(2) = 9.0
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = -3
Query: 449 PKXPPPPPP 423
P PPPPPP
Sbjct: 942 PAFPPPPPP 950
Score = 20.6 bits (41), Expect(2) = 9.0
Identities = 6/12 (50%), Positives = 7/12 (58%)
Frame = -3
Query: 461 VFXXPKXPPPPP 426
+ P PPPPP
Sbjct: 901 IITHPTPPPPPP 912
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,879,299
Number of Sequences: 5004
Number of extensions: 25683
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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