Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_I08
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    29   1.2  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    26   6.1  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    26   8.1  

>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 22/99 (22%), Positives = 33/99 (33%)
 Frame = +3

Query: 171 FXXFXXGGXVLWCFQSXXXXFSPSVXALIRXVXLQXRSGXNXFNHNALTLQYXLXXXFEL 350
           F     GG VLW   +                  + R+  N    +  T+QY     + +
Sbjct: 5   FAIVNKGGIVLWKKTNSLVNLKCLQVLFHEAFLSEQRTVNNTVTFDRYTMQYQEATQYSI 64

Query: 351 VFVVAYXRXLQLSYVDXFLNDVXLEFXGXVXE*APDRSL 467
           VFVV +     ++Y    LN     F     E   DR +
Sbjct: 65  VFVVVFQDLKCMAYSQSLLNSAHNIFLNLFKEKLEDRQV 103


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = +1

Query: 178 FSVXGALCYGVSKVLVXXFRHPXTL*YVVXXCKXALAITXSIIMP*HYNTN*XXXLNW 351
           + + GA CYGVS  L   F     L YVV           SII    ++ +    L+W
Sbjct: 300 YMIIGATCYGVSNTLEEYFASKLPL-YVVIGQLSLYGSIISIIQTFIFDRHHLYTLHW 356


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 503 KVLKXCEIWAKSQAKIPKQMRXFEDSQK 586
           K+LK C+IW K+    P+++       K
Sbjct: 121 KILKLCDIWEKASTFPPEKLESLRSKLK 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,761,057
Number of Sequences: 5004
Number of extensions: 19998
Number of successful extensions: 41
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)