Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_I08
(878 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X06272-1|CAA29608.1| 638|Homo sapiens protein ( Human mRNA for ... 87 6e-17
CR457025-1|CAG33306.1| 638|Homo sapiens SRPR protein. 87 6e-17
BC013583-1|AAH13583.1| 638|Homo sapiens signal recognition part... 87 6e-17
BC009110-1|AAH09110.1| 638|Homo sapiens signal recognition part... 87 6e-17
BC001162-1|AAH01162.1| 638|Homo sapiens signal recognition part... 87 6e-17
>X06272-1|CAA29608.1| 638|Homo sapiens protein ( Human mRNA for
docking protein (signal recognition particle receptor).
).
Length = 638
Score = 87.4 bits (207), Expect = 6e-17
Identities = 43/82 (52%), Positives = 50/82 (60%)
Frame = +3
Query: 171 FXXFXXGGXVLWCFQSXXXXFSPSVXALIRXVXLQXRSGXNXFNHNALTLQYXLXXXFEL 350
F F GG VLWCFQ + V ALIR V LQ R G N F H ALTL+Y L FEL
Sbjct: 5 FTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDNQFEL 64
Query: 351 VFVVAYXRXLQLSYVDXFLNDV 416
VFVV + + L L+YVD ++DV
Sbjct: 65 VFVVGFQKILTLTYVDRLIDDV 86
Score = 42.7 bits (96), Expect = 0.002
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +2
Query: 479 FNFKTTFDKVLKXCEIWAKSQAKIPKQMRXFEDSQKSKKTVASMIERKG 625
F+F+ F ++L+ E S+ + P M+ FEDS+K+KK V SMIE +G
Sbjct: 111 FDFQNDFLRLLREAE--ESSKIRAPTTMKKFEDSEKAKKPVRSMIETRG 157
>CR457025-1|CAG33306.1| 638|Homo sapiens SRPR protein.
Length = 638
Score = 87.4 bits (207), Expect = 6e-17
Identities = 43/82 (52%), Positives = 50/82 (60%)
Frame = +3
Query: 171 FXXFXXGGXVLWCFQSXXXXFSPSVXALIRXVXLQXRSGXNXFNHNALTLQYXLXXXFEL 350
F F GG VLWCFQ + V ALIR V LQ R G N F H ALTL+Y L FEL
Sbjct: 5 FTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDNQFEL 64
Query: 351 VFVVAYXRXLQLSYVDXFLNDV 416
VFVV + + L L+YVD ++DV
Sbjct: 65 VFVVGFQKILTLTYVDKLIDDV 86
Score = 42.7 bits (96), Expect = 0.002
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +2
Query: 479 FNFKTTFDKVLKXCEIWAKSQAKIPKQMRXFEDSQKSKKTVASMIERKG 625
F+F+ F ++L+ E S+ + P M+ FEDS+K+KK V SMIE +G
Sbjct: 111 FDFQNDFLRLLREAE--ESSKIRAPTTMKKFEDSEKAKKPVRSMIETRG 157
>BC013583-1|AAH13583.1| 638|Homo sapiens signal recognition
particle receptor ('docking protein') protein.
Length = 638
Score = 87.4 bits (207), Expect = 6e-17
Identities = 43/82 (52%), Positives = 50/82 (60%)
Frame = +3
Query: 171 FXXFXXGGXVLWCFQSXXXXFSPSVXALIRXVXLQXRSGXNXFNHNALTLQYXLXXXFEL 350
F F GG VLWCFQ + V ALIR V LQ R G N F H ALTL+Y L FEL
Sbjct: 5 FTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDNQFEL 64
Query: 351 VFVVAYXRXLQLSYVDXFLNDV 416
VFVV + + L L+YVD ++DV
Sbjct: 65 VFVVGFQKILTLTYVDKLIDDV 86
Score = 42.7 bits (96), Expect = 0.002
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +2
Query: 479 FNFKTTFDKVLKXCEIWAKSQAKIPKQMRXFEDSQKSKKTVASMIERKG 625
F+F+ F ++L+ E S+ + P M+ FEDS+K+KK V SMIE +G
Sbjct: 111 FDFQNDFLRLLREAE--ESSKIRAPTTMKKFEDSEKAKKPVRSMIETRG 157
>BC009110-1|AAH09110.1| 638|Homo sapiens signal recognition
particle receptor ('docking protein') protein.
Length = 638
Score = 87.4 bits (207), Expect = 6e-17
Identities = 43/82 (52%), Positives = 50/82 (60%)
Frame = +3
Query: 171 FXXFXXGGXVLWCFQSXXXXFSPSVXALIRXVXLQXRSGXNXFNHNALTLQYXLXXXFEL 350
F F GG VLWCFQ + V ALIR V LQ R G N F H ALTL+Y L FEL
Sbjct: 5 FTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDNQFEL 64
Query: 351 VFVVAYXRXLQLSYVDXFLNDV 416
VFVV + + L L+YVD ++DV
Sbjct: 65 VFVVGFQKILTLTYVDKLIDDV 86
Score = 42.7 bits (96), Expect = 0.002
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +2
Query: 479 FNFKTTFDKVLKXCEIWAKSQAKIPKQMRXFEDSQKSKKTVASMIERKG 625
F+F+ F ++L+ E S+ + P M+ FEDS+K+KK V SMIE +G
Sbjct: 111 FDFQNDFLRLLREAE--ESSKIRAPTTMKKFEDSEKAKKPVRSMIETRG 157
>BC001162-1|AAH01162.1| 638|Homo sapiens signal recognition
particle receptor ('docking protein') protein.
Length = 638
Score = 87.4 bits (207), Expect = 6e-17
Identities = 43/82 (52%), Positives = 50/82 (60%)
Frame = +3
Query: 171 FXXFXXGGXVLWCFQSXXXXFSPSVXALIRXVXLQXRSGXNXFNHNALTLQYXLXXXFEL 350
F F GG VLWCFQ + V ALIR V LQ R G N F H ALTL+Y L FEL
Sbjct: 5 FTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDNQFEL 64
Query: 351 VFVVAYXRXLQLSYVDXFLNDV 416
VFVV + + L L+YVD ++DV
Sbjct: 65 VFVVGFQKILTLTYVDKLIDDV 86
Score = 42.7 bits (96), Expect = 0.002
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +2
Query: 479 FNFKTTFDKVLKXCEIWAKSQAKIPKQMRXFEDSQKSKKTVASMIERKG 625
F+F+ F ++L+ E S+ + P M+ FEDS+K+KK V SMIE +G
Sbjct: 111 FDFQNDFLRLLREAE--ESSKIRAPTTMKKFEDSEKAKKPVRSMIETRG 157
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,405,215
Number of Sequences: 237096
Number of extensions: 699638
Number of successful extensions: 4496
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4496
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11215125244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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