Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_I06
(957 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 36 0.006
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.006
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.060
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 0.099
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.10
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.97
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 28 2.2
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 36.3 bits (80), Expect = 0.006
Identities = 25/89 (28%), Positives = 34/89 (38%)
Frame = +1
Query: 532 SXGLRPPCTXXPQQSPAQVQTVLPXLXPXXK*XPPXFTPPXPXLPXRXSPALRNPAPXPC 711
S PP P ++++ P P PP P +P + +P + + P P
Sbjct: 119 SASAAPPSAPAPPTPQSELRP--PTSAPPRPSIPPPSPASAPPIPSK-APPIPSSLPPPA 175
Query: 712 DYXAPTXSXPLPXPXPPSPQ*PXPPVXPP 798
AP S P P PS P PP PP
Sbjct: 176 QPAAPVKSPP-SAPSLPSAVPPMPPKVPP 203
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 36.3 bits (80), Expect = 0.006
Identities = 20/51 (39%), Positives = 21/51 (41%)
Frame = +1
Query: 646 PPXPXLPXRXSPALRNPAPXPCDYXAPTXSXPLPXPXPPSPQ*PXPPVXPP 798
PP P +PA PAP P AP P P P PP PP PP
Sbjct: 733 PPPPPAVIVPTPA---PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 31.1 bits (67), Expect = 0.24
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 685 LRNPAPXPCDYXAPTXSX-PLPXPXPPSPQ*PXPPVXPP 798
L++P P P PT + P+P P PP+P PP PP
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVP-PPAPIMGGPPPPPP 766
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.1 bits (72), Expect = 0.060
Identities = 25/79 (31%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Frame = +1
Query: 565 PQQSPAQVQTVLPXLXPXXK*XPPXFTPPXPXLPXRXSPALRNPAPXPCDYXAPTXSXPL 744
P P + LP L + P P P LP P+L AP AP + PL
Sbjct: 392 PPAIPGRSAPALPPLGNASRTSTPP-VPTPPSLPPSAPPSLPPSAPPSLPMGAPA-APPL 449
Query: 745 PXPXPPSPQ*P-XPPVXPP 798
P P +P P P PP
Sbjct: 450 PPSAPIAPPLPAGMPAAPP 468
Score = 27.1 bits (57), Expect = 3.9
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
Frame = +1
Query: 550 PCTXXPQQSPAQVQTVLPXLXPXXK*X--PPXFTPPXPXLPXRXSPALRNPAPXPCDYXA 723
P + P++ P+ P + P P +PP P P +PA+ + + P +
Sbjct: 237 PSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPS 296
Query: 724 PTXSXPLPXPXPPSPQ*PXPP 786
S P P PP
Sbjct: 297 SRVSAAALAANKKRPPPPPPP 317
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect(2) = 0.099
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +1
Query: 631 PPXFTPPXPXLPXRXSPALRNPAPXP 708
PP F PP P P+ NP P P
Sbjct: 168 PPSFQPPSAAAPATSLPSDYNPPPPP 193
Score = 23.8 bits (49), Expect(2) = 0.099
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 724 PTXSXPLPXPXPPSPQ*PXPPVXPP 798
P + PLP P P P PP PP
Sbjct: 229 PKQADPLPAPPP-----PPPPTLPP 248
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.10
Identities = 21/83 (25%), Positives = 31/83 (37%)
Frame = +1
Query: 550 PCTXXPQQSPAQVQTVLPXLXPXXK*XPPXFTPPXPXLPXRXSPALRNPAPXPCDYXAPT 729
P P +P+ +P P PP P P +P + P+ AP+
Sbjct: 1060 PSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPK-PSVAAPPVPKPSVAVPPVPAPS 1118
Query: 730 XSXPLPXPXPPSPQ*PXPPVXPP 798
+ P+P P +P P P PP
Sbjct: 1119 GAPPVPKPSVAAPPVPVPSGAPP 1141
Score = 30.7 bits (66), Expect = 0.32
Identities = 17/56 (30%), Positives = 21/56 (37%)
Frame = +1
Query: 631 PPXFTPPXPXLPXRXSPALRNPAPXPCDYXAPTXSXPLPXPXPPSPQ*PXPPVXPP 798
P PP P P P + PA P+ + P+P P P P P PP
Sbjct: 1164 PSVAAPPVPA-PSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
Score = 30.3 bits (65), Expect = 0.42
Identities = 22/84 (26%), Positives = 26/84 (30%)
Frame = +1
Query: 547 PPCTXXPQQSPAQVQTVLPXLXPXXK*XPPXFTPPXPXLPXRXSPALRNPAPXPCDYXAP 726
PP P +V P PP P P +P+ P P P P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPV-PKPSVAAPPVPAPSGAPPVPKPSVAAPP 1170
Query: 727 TXSXPLPXPXPPSPQ*PXPPVXPP 798
+ P P P PPV PP
Sbjct: 1171 VPAPSSGIPPVPKPAAGVPPVPPP 1194
Score = 28.7 bits (61), Expect = 1.3
Identities = 22/84 (26%), Positives = 24/84 (28%)
Frame = +1
Query: 547 PPCTXXPQQSPAQVQTVLPXLXPXXK*XPPXFTPPXPXLPXRXSPALRNPAPXPCDYXAP 726
PP P +V P PP P P + P P P P
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAA-GVP 1189
Query: 727 TXSXPLPXPXPPSPQ*PXPPVXPP 798
P P P P PPV PP
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPP 1213
Score = 27.1 bits (57), Expect = 3.9
Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Frame = +1
Query: 631 PPXFTPPXPXL--PXRXSPA--LRNPAPXPCDYXAPTXSXPLPXPXPPSPQ*PXPPVXPP 798
PP PP L P SPA L P P + + P+P P +P P P PP
Sbjct: 986 PPKDHPPSAPLSKPVSTSPAAPLARVPPVP---KLSSKAPPVPLPSADAPPIPVPSTAPP 1042
Score = 27.1 bits (57), Expect = 3.9
Identities = 17/60 (28%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Frame = +1
Query: 631 PPXFTPPXPX----LPXRXSPALRNPAPXPCDYXAPTXSXPLPXPXPPSPQ*PXPPVXPP 798
PP PP P +P P+ P P P P P P+P P V P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTP 1252
Score = 26.6 bits (56), Expect = 5.2
Identities = 18/59 (30%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Frame = +1
Query: 631 PPXFTPPXPX---LPXRXSPALRNPAPXPCDYXAPTXSXPLPXPXPPSPQ*PXPPVXPP 798
P PP P P P P P AP+ P+P P P P P PP
Sbjct: 1027 PSADAPPIPVPSTAPPVPIPTSTPPVPKSSS-GAPSAPPPVPAPSSEIPSIPAPSGAPP 1084
Score = 26.6 bits (56), Expect = 5.2
Identities = 15/56 (26%), Positives = 21/56 (37%)
Frame = +1
Query: 631 PPXFTPPXPXLPXRXSPALRNPAPXPCDYXAPTXSXPLPXPXPPSPQ*PXPPVXPP 798
P PP P P +P + P+ P+ + P+P P P P P P
Sbjct: 1184 PAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAP 1237
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.1 bits (62), Expect = 0.97
Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Frame = +1
Query: 634 PXFTPPX-PXLPXRXSPALRNPAPXPCDYXAPTXSXPLPXPXPPSPQ*PXPPVXPP 798
P TPP P + P P P P + P+P P +P P P P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 26.6 bits (56), Expect = 5.2
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Frame = +1
Query: 646 PPXPXLPXRXSPALRNPAPX----PCDYXAP--TXSXPLPX--PXPPSPQ*PXPPVXP 795
P P P +P + PAP P AP + P P P PP+P PP P
Sbjct: 1433 PTNPGAPSNHAPQVVPPAPMHAVAPVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVP 1490
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 2.2
Identities = 17/65 (26%), Positives = 20/65 (30%)
Frame = +1
Query: 565 PQQSPAQVQTVLPXLXPXXK*XPPXFTPPXPXLPXRXSPALRNPAPXPCDYXAPTXSXPL 744
P VQT P PP P +P + A+ P P A P
Sbjct: 339 PSAGYQTVQTTTTTTEAAAAQYPQAAFPPPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPP 398
Query: 745 PXPXP 759
P P P
Sbjct: 399 PAPAP 403
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,581,834
Number of Sequences: 5004
Number of extensions: 20552
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 489310570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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