Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_I05
(861 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical... 34 0.11
Z49127-2|CAA88949.1| 245|Caenorhabditis elegans Hypothetical pr... 34 0.15
AC024824-2|AAK85502.1| 740|Caenorhabditis elegans Hypothetical ... 33 0.26
Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical pr... 32 0.60
Z78411-2|CAB01646.1| 285|Caenorhabditis elegans Hypothetical pr... 32 0.60
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr... 31 0.80
Z79604-3|CAD36502.1| 817|Caenorhabditis elegans Hypothetical pr... 31 0.80
Z79604-2|CAB01900.1| 780|Caenorhabditis elegans Hypothetical pr... 31 0.80
AF332205-1|AAK17976.1| 817|Caenorhabditis elegans nuclear recep... 31 0.80
AF332204-1|AAK17975.1| 519|Caenorhabditis elegans nuclear recep... 31 0.80
Z81540-9|CAD89742.1| 740|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z79756-9|CAK12562.1| 830|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z79756-8|CAB02122.1| 891|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z79756-7|CAK12561.1| 855|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z68760-2|CAA92995.1| 597|Caenorhabditis elegans Hypothetical pr... 31 1.4
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 30 1.8
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 30 1.8
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 30 1.8
U38378-1|AAA79751.1| 418|Caenorhabditis elegans Hypothetical pr... 30 1.8
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 30 2.4
AL117193-13|CAB55004.2| 478|Caenorhabditis elegans Hypothetical... 29 3.2
AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical ... 29 5.6
AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical ... 29 5.6
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ... 29 5.6
AC006762-2|AAF60558.2| 607|Caenorhabditis elegans Hypothetical ... 29 5.6
Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr... 28 7.4
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 28 7.4
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr... 28 7.4
AF002198-9|AAF99936.1| 450|Caenorhabditis elegans Hypothetical ... 28 7.4
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 28 7.4
Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical pr... 28 9.8
Z73910-4|CAA98136.1| 662|Caenorhabditis elegans Hypothetical pr... 28 9.8
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 28 9.8
AF067209-1|AAC16982.2| 553|Caenorhabditis elegans Warthog (hedg... 28 9.8
>AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical
protein Y37A1B.11 protein.
Length = 691
Score = 34.3 bits (75), Expect = 0.11
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 405 TPVPSKPVHPTLPPNQIKPVPVYPTPATRPITTPGP 512
+P PS PT PP +P P PTP P+ P P
Sbjct: 537 SPEPSPVREPTPPPPPREPTPREPTPEPEPVREPTP 572
>Z49127-2|CAA88949.1| 245|Caenorhabditis elegans Hypothetical
protein F13D12.3 protein.
Length = 245
Score = 33.9 bits (74), Expect = 0.15
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 390 VVTTLTPVPSKPVHPTLPPNQIKPVPVYPTPATRPITTPGP 512
V + PV ++P+ P P +PVP P PA P+ P P
Sbjct: 130 VPAVIPPVVTQPIVPPPVPEVSEPVPEPPIPAPGPVAPPTP 170
>AC024824-2|AAK85502.1| 740|Caenorhabditis elegans Hypothetical
protein Y55B1BR.2 protein.
Length = 740
Score = 33.1 bits (72), Expect = 0.26
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 420 KPVHPTLPPNQIKPVPVYPTPATRPITTPGPGSVQ 524
+P+ P P + VP PTP+ PI PG GS +
Sbjct: 274 EPLPPPPRPPSVPAVPAVPTPSRDPILGPGSGSAR 308
>Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical
protein DY3.5 protein.
Length = 796
Score = 31.9 bits (69), Expect = 0.60
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 390 VVTTLTPVPSKPVHPTLPPNQIKPVPVYPTPATRPITTPGPGS 518
V++ VP +PV P +PP + V P P TRP + P S
Sbjct: 593 VISQQQVVPPRPVQP-VPPMSVATVTRGPPPPTRPASVIAPSS 634
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Frame = +3
Query: 405 TPVPSKPVHPTLPPN-QIKPVPVYPTPATRPITTPGP 512
+P P T+ P Q K V P PAT + TP P
Sbjct: 645 SPTTRPPTRATIRPTPQNKAVTSRPAPATSSVVTPSP 681
>Z78411-2|CAB01646.1| 285|Caenorhabditis elegans Hypothetical
protein F02D8.2 protein.
Length = 285
Score = 31.9 bits (69), Expect = 0.60
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 402 LTPVPSKPVHPTLPPNQIKPVPVYPTPATRPITTPGP 512
+ P P+ P + PP + P PVY TP TT P
Sbjct: 113 MVPYPTPPAYVRPPPVYVTPPPVYITPPPTTTTTIPP 149
>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
protein C34F6.1 protein.
Length = 1043
Score = 31.5 bits (68), Expect = 0.80
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +3
Query: 402 LTPVPSKPVHPTLPPNQIKPVPVYPTPAT-RPITT 503
+ P P P PT PP+ + P+ YP P PITT
Sbjct: 85 VNPAPPLPTLPTPPPSTLPPI-TYPRPTVGAPITT 118
>Z79604-3|CAD36502.1| 817|Caenorhabditis elegans Hypothetical
protein ZK662.3b protein.
Length = 817
Score = 31.5 bits (68), Expect = 0.80
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +3
Query: 390 VVTTLTPV-PS-KPVHPTLPPNQIKPVPVYPTPATRPITTPGPGSV 521
VV+ + PV P+ P+ P L P I P P+ PTP PITTP G++
Sbjct: 388 VVSNMAPVMPTVNPLDPLLAPAFIAP-PM-PTPINVPITTPIAGAL 431
>Z79604-2|CAB01900.1| 780|Caenorhabditis elegans Hypothetical
protein ZK662.3a protein.
Length = 780
Score = 31.5 bits (68), Expect = 0.80
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +3
Query: 390 VVTTLTPV-PS-KPVHPTLPPNQIKPVPVYPTPATRPITTPGPGSV 521
VV+ + PV P+ P+ P L P I P P+ PTP PITTP G++
Sbjct: 351 VVSNMAPVMPTVNPLDPLLAPAFIAP-PM-PTPINVPITTPIAGAL 394
>AF332205-1|AAK17976.1| 817|Caenorhabditis elegans nuclear receptor
NHR-48 protein.
Length = 817
Score = 31.5 bits (68), Expect = 0.80
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +3
Query: 390 VVTTLTPV-PS-KPVHPTLPPNQIKPVPVYPTPATRPITTPGPGSV 521
VV+ + PV P+ P+ P L P I P P+ PTP PITTP G++
Sbjct: 388 VVSNMAPVMPTVNPLDPLLAPAFIAP-PM-PTPINVPITTPIAGAL 431
>AF332204-1|AAK17975.1| 519|Caenorhabditis elegans nuclear receptor
NHR-48 protein.
Length = 519
Score = 31.5 bits (68), Expect = 0.80
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = +3
Query: 390 VVTTLTPV-PS-KPVHPTLPPNQIKPVPVYPTPATRPITTPGPGSV 521
VV+ + PV P+ P+ P L P I P P+ PTP PITTP G++
Sbjct: 90 VVSNMAPVMPTVNPLDPLLAPAFIAP-PM-PTPINVPITTPIAGAL 133
>Z81540-9|CAD89742.1| 740|Caenorhabditis elegans Hypothetical
protein F46B3.17 protein.
Length = 740
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +3
Query: 396 TTLTPVPSKPVHPTL--PPNQIKPVPVYPTPATR-PITTPGP 512
TT +P P+ HPTL ++ P+P+ P R P+ PGP
Sbjct: 177 TTASPSPTPQQHPTLMNSGERLGPLPICPLDENRCPMGPPGP 218
>Z79756-9|CAK12562.1| 830|Caenorhabditis elegans Hypothetical
protein F53C11.5c protein.
Length = 830
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 405 TPVPSKPVHPTLPP-NQIKPVPVYPTPATRPITTPGPG 515
+P PS+P+ PP +Q +P P+ RP P PG
Sbjct: 404 SPRPSQPLQTIAPPPSQSSNIPPPSLPSPRPSALPAPG 441
>Z79756-8|CAB02122.1| 891|Caenorhabditis elegans Hypothetical
protein F53C11.5b protein.
Length = 891
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 405 TPVPSKPVHPTLPP-NQIKPVPVYPTPATRPITTPGPG 515
+P PS+P+ PP +Q +P P+ RP P PG
Sbjct: 465 SPRPSQPLQTIAPPPSQSSNIPPPSLPSPRPSALPAPG 502
>Z79756-7|CAK12561.1| 855|Caenorhabditis elegans Hypothetical
protein F53C11.5a protein.
Length = 855
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 405 TPVPSKPVHPTLPP-NQIKPVPVYPTPATRPITTPGPG 515
+P PS+P+ PP +Q +P P+ RP P PG
Sbjct: 429 SPRPSQPLQTIAPPPSQSSNIPPPSLPSPRPSALPAPG 466
>Z68760-2|CAA92995.1| 597|Caenorhabditis elegans Hypothetical
protein F36H1.3 protein.
Length = 597
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +3
Query: 411 VPSKPVHPTLPPNQIKPVPVYP--TPATRPITTPGPGSVQ 524
+PS PT PP KPV P +P P+++P P VQ
Sbjct: 508 IPSPAKLPTAPPPVEKPVTPSPSASPLPSPVSSPAPQLVQ 547
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 405 TPVPSKPVHPTLP-PNQIKPVPVYPTPATRPITTPGP 512
+P P +P HP+ P+ P P YP+P+ + P P
Sbjct: 354 SPAPQEPAHPSPSYPSPSYPSPSYPSPSYPSPSYPSP 390
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 390 VVTTLTPVPSKPVH-PTLPPNQIKPVPVYPTPATRPITTP 506
V T+ T P+ P PT PP+ + P P T P T P
Sbjct: 614 VTTSPTLAPTSPTKLPTSPPSTVGTSPTAPANLTTPTTAP 653
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 396 TTLTPVPSKPVHPTLPPNQIKPVPVYPTPATRPITTP 506
TT T + T P + P TP TRP+T P
Sbjct: 692 TTTTTTTTTTTTQTTPTTPVVTTPSTITPTTRPVTQP 728
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 390 VVTTLTPVPSKPVH-PTLPPNQIKPVPVYPTPATRPITTP 506
V T+ T P+ P PT PP+ + P P T P T P
Sbjct: 670 VTTSPTLAPTSPTKLPTSPPSTVGTSPTAPANLTTPTTAP 709
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 396 TTLTPVPSKPVHPTLPPNQIKPVPVYPTPATRPITTP 506
TT T + T P + P TP TRP+T P
Sbjct: 748 TTTTTTTTTTTTQTTPTTPVVTTPSTITPTTRPVTQP 784
>U38378-1|AAA79751.1| 418|Caenorhabditis elegans Hypothetical
protein R11F4.3 protein.
Length = 418
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = +3
Query: 411 VPSKPVHPTLPPNQIKPVPVYPTPATRPI 497
VP P PT PP P P PT A RPI
Sbjct: 165 VPPIPDAPTNPPTTTTPPPPPPTRAPRPI 193
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 402 LTPVPSKPVHPTLPPNQIKPVPVYPTPATRPITTP 506
+ P P++P P + P+ KP P P TRP P
Sbjct: 222 IEPTPARPA-PYIEPSTAKPQPRPQPPRTRPYVAP 255
>AL117193-13|CAB55004.2| 478|Caenorhabditis elegans Hypothetical
protein Y105C5A.24 protein.
Length = 478
Score = 29.5 bits (63), Expect = 3.2
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 408 PVPSKPVHPTLPPNQIKPVPVYPTPATRPITTPGP 512
P+P + P + P ++ P V TPA P T P
Sbjct: 334 PLPKTEITPDVKPKEVAPAKVQETPALLPDTLKVP 368
>AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical
protein Y48B6A.6b protein.
Length = 533
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 408 PVPSKPVHPTLPPNQIKPVPVYPTPATRPITTPGP 512
P P+ P+ PT+P P PT PI +PGP
Sbjct: 266 PPPNIPL-PTIPQEVQSPPSPRPTSVPPPIPSPGP 299
>AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical
protein Y48B6A.6a protein.
Length = 687
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 408 PVPSKPVHPTLPPNQIKPVPVYPTPATRPITTPGP 512
P P+ P+ PT+P P PT PI +PGP
Sbjct: 266 PPPNIPL-PTIPQEVQSPPSPRPTSVPPPIPSPGP 299
>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
protein Y8A9A.2 protein.
Length = 1360
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +3
Query: 396 TTLTPVPSKPVHPTLPPNQIKPVPVYPTPATRP 494
T+L +P + P+LP NQ++ +P +P +P
Sbjct: 283 TSLPALPLILLQPSLPQNQLRSLPAHPLNLLQP 315
>AC006762-2|AAF60558.2| 607|Caenorhabditis elegans Hypothetical
protein Y42G9A.4a protein.
Length = 607
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +3
Query: 393 VTTLTPVPSKPVHPTLPPNQIKPVPVYPTPATRPITTPGP 512
V LTP+PS T PP V+PT P +TP P
Sbjct: 210 VPPLTPLPSPGAQSTAPP-------VFPTSTPTPTSTPTP 242
>Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical protein
F22G12.5 protein.
Length = 2396
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +3
Query: 393 VTTLTPVPSKPVHPTLPPNQIKPVPVYPTPATRPITTPGPGSVQXLV 533
+ T +PVPS P+ PP Q+ P P PA+ P P S LV
Sbjct: 1488 IRTSSPVPSTQTTPSRPP-QMPP----PPPASGKTIPPPPSSSTPLV 1529
>Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical protein
F22G12.5 protein.
Length = 2396
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +3
Query: 393 VTTLTPVPSKPVHPTLPPNQIKPVPVYPTPATRPITTPGPGSVQXLV 533
+ T +PVPS P+ PP Q+ P P PA+ P P S LV
Sbjct: 1488 IRTSSPVPSTQTTPSRPP-QMPP----PPPASGKTIPPPPSSSTPLV 1529
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +3
Query: 396 TTLTPVPSKPVHPTLPPNQIKPVPVYPTPATRPITTP 506
TT T + T P + P TP TRP+T P
Sbjct: 571 TTTTTTTTTTTTQTTPTTPVVTTPSTITPTTRPVTQP 607
>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical protein
C27F2.8 protein.
Length = 1715
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/35 (48%), Positives = 20/35 (57%)
Frame = +3
Query: 396 TTLTPVPSKPVHPTLPPNQIKPVPVYPTPATRPIT 500
+T TPVP+ P P + IK PTPATRP T
Sbjct: 1107 STTTPVPTVP-STAKPESSIKK----PTPATRPST 1136
>AF002198-9|AAF99936.1| 450|Caenorhabditis elegans Hypothetical
protein F35F10.11 protein.
Length = 450
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = +3
Query: 417 SKPVHPTLPPNQIKPVPVYPTPATRPITTPGPG 515
S P+H LPP + P P PI P PG
Sbjct: 325 SVPIHQYLPPAYYQQDPNLPPSKPTPIGAPPPG 357
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 408 PVPSKPVHPTLPPNQIKPVPVYPTPATRPITTPGPGS 518
P PS+P P++P + P PA P +P S
Sbjct: 560 PTPSEPAKPSMPSGESPAQPEPSIPAVNPEPSPSQPS 596
>Z98866-8|CAB11562.2| 425|Caenorhabditis elegans Hypothetical
protein Y49E10.10 protein.
Length = 425
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = +3
Query: 396 TTLTPVPSKPVHPTLPPNQIKPVPVYPTPATRPITTPGP 512
TT P P P P + V P P P+T P P
Sbjct: 195 TTKAPPPPTTKAPPPPTTNKEVTTVAPVPKPAPVTAPAP 233
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Frame = +3
Query: 393 VTTLTPVPSKPVHPTLPPNQIKPV---PVYPTPATRPITTPGP 512
VT P P P + T KP P PTP P+ +P P
Sbjct: 228 VTAPAPNPPAPENTTAKVETTKPTKAAPPAPTPVPNPVPSPPP 270
>Z73910-4|CAA98136.1| 662|Caenorhabditis elegans Hypothetical
protein M117.4 protein.
Length = 662
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/34 (41%), Positives = 16/34 (47%)
Frame = +3
Query: 420 KPVHPTLPPNQIKPVPVYPTPATRPITTPGPGSV 521
KP+ LPP P PV P A P T P +V
Sbjct: 161 KPLAKPLPPPSAAPPPVAPLSAPVPSTGAPPSAV 194
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +3
Query: 408 PVPSKPVHPTLPPNQIKPVPVYPTPATRPITTPGP 512
P+P P P P P P+ P P P+ P P
Sbjct: 50 PMPVCPPPPPCPAQFCPPPPICPPPPPPPMPCPPP 84
>AF067209-1|AAC16982.2| 553|Caenorhabditis elegans Warthog
(hedgehog-like family)protein 9 protein.
Length = 553
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +3
Query: 402 LTPVPSKPVHPT--LPPNQIKPVPVYPTPATRPITTPGP 512
LTP P + VH T +P PV V P T+P P P
Sbjct: 316 LTPKP-RIVHTTTVMPTTHAPPVQVQVEPVTQPTPPPNP 353
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,535,061
Number of Sequences: 27780
Number of extensions: 222767
Number of successful extensions: 1197
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -