Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_I05
         (861 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.7  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   3.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   8.4  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 383 QTCRDNSNACTFEAGPSNS 439
           +TC+ NSN  T  AG +N+
Sbjct: 217 ETCQRNSNNSTITAGNANT 235


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +2

Query: 473 PY-SSDAAHHHSRTWKRAAARXF 538
           PY S+ AAHHH +  +  AA  F
Sbjct: 90  PYVSAAAAHHHHQQQQAVAAAAF 112


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 469 CTLLQRRGPSPLQDLEAC 522
           C   +++GP+P Q  E C
Sbjct: 170 CDARKKKGPTPRQQEELC 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,732
Number of Sequences: 438
Number of extensions: 2743
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)