Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_I02
         (1027 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27080-4|CAB61015.1|  176|Caenorhabditis elegans Hypothetical pr...    52   5e-07
AB190513-1|BAD51397.1|  221|Caenorhabditis elegans superoxide di...    52   5e-07
AB003924-1|BAA28262.1|  176|Caenorhabditis elegans SOD4-1 protein.     52   5e-07
X77020-1|CAA54318.1|  158|Caenorhabditis elegans copper/zinc sup...    44   2e-04
L20135-1|AAA28147.1|  158|Caenorhabditis elegans superoxide dism...    44   2e-04
AC006608-8|AAV34795.1|  158|Caenorhabditis elegans Sod (superoxi...    44   2e-04
AC006608-7|AAF39759.1|  180|Caenorhabditis elegans Sod (superoxi...    44   2e-04
U42833-3|AAA83577.1|  178|Caenorhabditis elegans Sod (superoxide...    41   0.002

>Z27080-4|CAB61015.1|  176|Caenorhabditis elegans Hypothetical
           protein F55H2.1 protein.
          Length = 176

 Score = 52.4 bits (120), Expect = 5e-07
 Identities = 22/53 (41%), Positives = 28/53 (52%)
 Frame = +3

Query: 243 ISGVXPXXYGFXXXXKGDXXGGCLSTGSDXNPEXXXHGHPNDVNXXVXDLGXV 401
           +SG+    +GF    KGD   GCLS G   NP    HG P+D N  + DLG +
Sbjct: 59  VSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNI 111


>AB190513-1|BAD51397.1|  221|Caenorhabditis elegans superoxide
           dismutase protein.
          Length = 221

 Score = 52.4 bits (120), Expect = 5e-07
 Identities = 22/53 (41%), Positives = 28/53 (52%)
 Frame = +3

Query: 243 ISGVXPXXYGFXXXXKGDXXGGCLSTGSDXNPEXXXHGHPNDVNXXVXDLGXV 401
           +SG+    +GF    KGD   GCLS G   NP    HG P+D N  + DLG +
Sbjct: 59  VSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNI 111


>AB003924-1|BAA28262.1|  176|Caenorhabditis elegans SOD4-1 protein.
          Length = 176

 Score = 52.4 bits (120), Expect = 5e-07
 Identities = 22/53 (41%), Positives = 28/53 (52%)
 Frame = +3

Query: 243 ISGVXPXXYGFXXXXKGDXXGGCLSTGSDXNPEXXXHGHPNDVNXXVXDLGXV 401
           +SG+    +GF    KGD   GCLS G   NP    HG P+D N  + DLG +
Sbjct: 59  VSGLAAGKHGFHIHEKGDTGNGCLSAGGHYNPHKLSHGAPDDSNRHIGDLGNI 111


>X77020-1|CAA54318.1|  158|Caenorhabditis elegans copper/zinc
           superoxide dismutase protein.
          Length = 158

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 21/53 (39%), Positives = 24/53 (45%)
 Frame = +3

Query: 243 ISGVXPXXYGFXXXXKGDXXGGCLSTGSDXNPEXXXHGHPNDVNXXVXDLGXV 401
           I G+ P  +GF     GD   GC+S G   NP    HG P      V DLG V
Sbjct: 35  IKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNV 87


>L20135-1|AAA28147.1|  158|Caenorhabditis elegans superoxide
           dismutase protein.
          Length = 158

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 21/53 (39%), Positives = 24/53 (45%)
 Frame = +3

Query: 243 ISGVXPXXYGFXXXXKGDXXGGCLSTGSDXNPEXXXHGHPNDVNXXVXDLGXV 401
           I G+ P  +GF     GD   GC+S G   NP    HG P      V DLG V
Sbjct: 35  IKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNV 87


>AC006608-8|AAV34795.1|  158|Caenorhabditis elegans Sod (superoxide
           dismutase) protein1, isoform b protein.
          Length = 158

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 21/53 (39%), Positives = 24/53 (45%)
 Frame = +3

Query: 243 ISGVXPXXYGFXXXXKGDXXGGCLSTGSDXNPEXXXHGHPNDVNXXVXDLGXV 401
           I G+ P  +GF     GD   GC+S G   NP    HG P      V DLG V
Sbjct: 35  IKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNV 87


>AC006608-7|AAF39759.1|  180|Caenorhabditis elegans Sod (superoxide
           dismutase) protein1, isoform a protein.
          Length = 180

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 21/53 (39%), Positives = 24/53 (45%)
 Frame = +3

Query: 243 ISGVXPXXYGFXXXXKGDXXGGCLSTGSDXNPEXXXHGHPNDVNXXVXDLGXV 401
           I G+ P  +GF     GD   GC+S G   NP    HG P      V DLG V
Sbjct: 57  IKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNV 109


>U42833-3|AAA83577.1|  178|Caenorhabditis elegans Sod (superoxide
           dismutase) protein5 protein.
          Length = 178

 Score = 40.7 bits (91), Expect = 0.002
 Identities = 21/53 (39%), Positives = 24/53 (45%)
 Frame = +3

Query: 243 ISGVXPXXYGFXXXXKGDXXGGCLSTGSDXNPEXXXHGHPNDVNXXVXDLGXV 401
           I G+ P  +GF     GD   GC S G   NP    HG  + V   V DLG V
Sbjct: 55  IKGLSPGLHGFHIHQYGDSTDGCTSAGPHFNPCKMNHGGRDSVVRHVGDLGNV 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,470,164
Number of Sequences: 27780
Number of extensions: 141525
Number of successful extensions: 206
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2709719642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)