Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_I01
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0444 + 3141018-3141503,3141967-3142066,3142940-3142980           30   2.1  
03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,235...    30   2.1  
06_03_0095 - 16575938-16576585,16577028-16577219,16577294-165773...    29   3.7  
10_08_0295 - 16581014-16583071                                         29   6.4  
12_01_0378 - 2946916-2947590                                           28   8.5  

>06_01_0444 + 3141018-3141503,3141967-3142066,3142940-3142980
          Length = 208

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 20/84 (23%), Positives = 34/84 (40%), Gaps = 1/84 (1%)
 Frame = +2

Query: 467 DDGRPAYGDGKDKTSPRVSWKLIALWENNKVYFKILNTERNQYLVL-GVGTNWNGXHMAF 643
           DD R      +D+ S   +W +  L  N      + +    +YL       +WN   +  
Sbjct: 24  DDDRSGVSLQQDRASVHAAWAVHILHFNGGDVLMLHSAANGRYLAAYRAEGSWNVERL-- 81

Query: 644 GVNSVDSFRAQWYLQPAKYDNDVL 715
            +N + S    WY   ++Y +DVL
Sbjct: 82  NLNRLPSLTFSWYALGSRYGDDVL 105


>03_01_0300 + 2350232-2352274,2352349-2352669,2352752-2352838,
            2353031-2353708,2353800-2353964,2354139-2354433,
            2354581-2354795,2354885-2355190,2355269-2355332,
            2355426-2355665,2355783-2355886
          Length = 1505

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/58 (24%), Positives = 29/58 (50%)
 Frame = +3

Query: 42   DLSSFLGNTQDSTLQR*SPL*LFYVFSWHLCMLQIPTSLTTFWRSSFTIASSSPITTV 215
            D++  LG    +T+Q    + +    +W + +L +P ++   W   + IASS  +T +
Sbjct: 1054 DIAFRLGGFASTTIQLLGIVAVMSKVTWQVLILIVPMAVACMWMQRYYIASSRELTRI 1111


>06_03_0095 -
           16575938-16576585,16577028-16577219,16577294-16577392,
           16577496-16577618,16577717-16577929,16578143-16578251,
           16578339-16578427,16578604-16578880,16578974-16579084,
           16579160-16580508,16581218-16581631
          Length = 1207

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -1

Query: 372 WETIPDDVLGALEPKLIGVLHAVHLVVSISLFTTFVMTSLFFS 244
           W   PDD     +PK   +    HL+ ++ L++ F+  SL+ S
Sbjct: 344 WYLRPDDSTIFYDPKRAALASFFHLLTALMLYSYFIPISLYIS 386


>10_08_0295 - 16581014-16583071
          Length = 685

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 753 HWSRTVEPSGHRMAWGIXGQSNRKSR 830
           HWSRT  PSG + A G   Q   ++R
Sbjct: 341 HWSRTPHPSGRQRAHGDGCQGRSRTR 366


>12_01_0378 - 2946916-2947590
          Length = 224

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +2

Query: 71  GLDAPKMKPAIVILCLFVASLYAADSDVPNDILEEQLYNSVVVADYD 211
           G+    ++P +++L    ASL AA++ VP    + ++  +VV  D+D
Sbjct: 87  GVHYDAIRPRLLLLLAGGASLGAANATVPGVFHQPRMSTTVVAIDFD 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,645,459
Number of Sequences: 37544
Number of extensions: 401400
Number of successful extensions: 1162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)