Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_H23
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0824 - 32243495-32244319,32244449-32244859 43 4e-04
11_01_0750 - 6315126-6315896,6316371-6316784 39 0.006
01_01_1013 - 8015552-8015613,8016898-8018035 30 2.1
11_02_0012 - 7346282-7347136,7347234-7347593 30 2.8
09_06_0317 - 22265786-22267618,22267874-22268446,22268546-222686... 30 2.8
01_01_1152 + 9170628-9171899 30 2.8
09_02_0226 - 6007656-6008063,6012166-6012678 29 5.0
03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869 29 5.0
11_02_0011 - 7337618-7338496,7338596-7338991 29 6.6
02_02_0219 + 7985152-7985575,7985818-7985894,7986067-7986127,798... 28 8.7
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 42.7 bits (96), Expect = 4e-04
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = +3
Query: 396 ANKIYVSDQYKLADAFSRT-ANLFRSEVDNINFSAP-KNAADIINRWADEQTQGHIKTPV 569
AN ++V +L A++R A+ +R+E ++F + A IN W + T G IK +
Sbjct: 102 ANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFESATAGRIKDFL 161
Query: 570 SEDXIDPATAVAMFXVIFFQG 632
+D +D AT + ++F+G
Sbjct: 162 PKDAVDRATPAVLGNALYFKG 182
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 38.7 bits (86), Expect = 0.006
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Frame = +3
Query: 348 LLNQRYAEFDPKFLTVANKIYVSDQYKLADAFSRTA-NLFRSEVDNINF-SAPKNAADII 521
+L R P+ L A ++ L+ F A N++ S +F + P++A D I
Sbjct: 88 VLRDRSTSGGPR-LAFAGGVWADASRSLSPEFVGLAGNVYGSAAKKADFKNKPEDAPDQI 146
Query: 522 NRWADEQTQGHIKTPVSEDXIDPATAVAMFXVIFFQG 632
N W + T+G + T + ID T + + ++F+G
Sbjct: 147 NSWVKDSTKGTVTTLLPAGTIDQNTGLVLGSALYFRG 183
>01_01_1013 - 8015552-8015613,8016898-8018035
Length = 399
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +2
Query: 176 ILKESYNLADDKNVIASPLGVMLL-LSLXRVWSRCTVQGRDKGNPWGRGGSRVITHIRII 352
I K +++AD ++ S +L+ S+ +W+ V + PW GG+ V+ H I+
Sbjct: 153 ITKTIFHVADLHPIVGSDKAALLIYFSVPEIWATHVVDYPPRDRPW--GGNGVVVHKTIV 210
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 29.9 bits (64), Expect = 2.8
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +3
Query: 498 PKNAADIINRWADEQTQGHIKTPVSEDXIDPATAVAMFXVIFFQG 632
PK++ IN+W + T I+ + + + TA+ + I+F+G
Sbjct: 121 PKSSRKKINKWVSKATNKLIREILPDGSVHGGTALVLVNAIYFKG 165
>09_06_0317 -
22265786-22267618,22267874-22268446,22268546-22268677,
22268931-22269137,22269287-22269388,22270742-22271032
Length = 1045
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 330 TLEPPLPQGFPLSLPWTVHRLQTRXK 253
+L PPLP G PLS P+ QT K
Sbjct: 751 SLRPPLPPGLPLSSPFVCPTTQTSEK 776
>01_01_1152 + 9170628-9171899
Length = 423
Score = 29.9 bits (64), Expect = 2.8
Identities = 11/45 (24%), Positives = 25/45 (55%)
Frame = +3
Query: 498 PKNAADIINRWADEQTQGHIKTPVSEDXIDPATAVAMFXVIFFQG 632
P+ A + +N + + T+G I+ + + +D +T V + + F+G
Sbjct: 156 PEQARERVNAFVSDATEGLIRDVLPPNSVDSSTVVVLANAVHFKG 200
>09_02_0226 - 6007656-6008063,6012166-6012678
Length = 306
Score = 29.1 bits (62), Expect = 5.0
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 437 RVLQDSESVQKRSGQH*LQRSEECR*YHQPLGGRTDSRTHKDSCERR 577
R L+D ++Q + + CR +PL R D RTH+ +C RR
Sbjct: 218 RPLKDFRTLQTHYKRKHCAKPFACRKCGKPLAVRGDWRTHEKNCGRR 264
>03_05_0296 + 22866280-22866282,22867178-22867444,22868363-22868869
Length = 258
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 510 ADIINRWADEQTQGHIKTPVSEDXIDPATAVAMFXVIFFQG 632
A +N W D T G IK + +D T + + ++F+G
Sbjct: 6 ASQVNSWVDRVTSGLIKEILPPGSVDHTTRLVLGNALYFKG 46
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +3
Query: 405 IYVSDQYKLADAF-SRTANLFRSEVDNINFSA-PKNAADIINRWADEQTQGHIKTPVSED 578
++ + +L A+ + A +++ NF PK + IN+W + T I + +
Sbjct: 100 VWHDETLELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWVSKATNKLIPEILPDG 159
Query: 579 XIDPATAVAMFXVIFFQG 632
+ TA+ + I+F+G
Sbjct: 160 SVHVDTALVLVNAIYFKG 177
>02_02_0219 +
7985152-7985575,7985818-7985894,7986067-7986127,
7986276-7986519,7986613-7987006,7987292-7987729
Length = 545
Score = 28.3 bits (60), Expect = 8.7
Identities = 23/74 (31%), Positives = 35/74 (47%)
Frame = +3
Query: 309 GGGEAQESSHTYGLLNQRYAEFDPKFLTVANKIYVSDQYKLADAFSRTANLFRSEVDNIN 488
GGG E+S YGLL R + P T+ + + ++ + +S + N R E N +
Sbjct: 233 GGGLPPEASRLYGLLQHRQS---PAIATMQTLDFKNSSFRNQE-WSFSFNHQRKETMNPS 288
Query: 489 FSAPKNAADIINRW 530
S+ AA I RW
Sbjct: 289 SSSSTTAA--IRRW 300
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,383,397
Number of Sequences: 37544
Number of extensions: 451270
Number of successful extensions: 1134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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