Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_H22
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa...   130   3e-31
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac...   130   3e-31
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce...    27   2.6  

>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
           L19B|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 193

 Score =  130 bits (313), Expect = 3e-31
 Identities = 66/159 (41%), Positives = 86/159 (54%)
 Frame = +1

Query: 88  SLKLQKXLAASVMRCGXXXVWLXPNXIXEIANTNSRQNXRKXXXXGLVIKKPVAVHSRAR 267
           +L+ QK LAASV++CG   VW+ PN I EI+N NSRQN RK    GLVI+KP  +HSR R
Sbjct: 3   NLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFR 62

Query: 268 VRKNTEARXKGRXCGFGXXXGXAXARMPQKXLWVXXXXVXXXXXXXXXXXXXXDXXLYHS 447
           +RK   A+  GR  G+G   G A ARMP   +W+    V              D  LYH+
Sbjct: 63  IRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHT 122

Query: 448 LYMKAXGXVFKNXRVLXEXXHXXXAEXAXXXXLSDXAEA 564
           LY++A G  FK+ R L E      AE      + +  +A
Sbjct: 123 LYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDA 161


>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
           L19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 193

 Score =  130 bits (313), Expect = 3e-31
 Identities = 66/159 (41%), Positives = 86/159 (54%)
 Frame = +1

Query: 88  SLKLQKXLAASVMRCGXXXVWLXPNXIXEIANTNSRQNXRKXXXXGLVIKKPVAVHSRAR 267
           +L+ QK LAASV++CG   VW+ PN I EI+N NSRQN RK    GLVI+KP  +HSR R
Sbjct: 3   NLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFR 62

Query: 268 VRKNTEARXKGRXCGFGXXXGXAXARMPQKXLWVXXXXVXXXXXXXXXXXXXXDXXLYHS 447
           +RK   A+  GR  G+G   G A ARMP   +W+    V              D  LYH+
Sbjct: 63  IRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHT 122

Query: 448 LYMKAXGXVFKNXRVLXEXXHXXXAEXAXXXXLSDXAEA 564
           LY++A G  FK+ R L E      AE      + +  +A
Sbjct: 123 LYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDA 161


>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = -3

Query: 284 SVFLRTRAREWTATGFLMTRPXXXXLRXFC 195
           S F  T  REWT    L T      +R FC
Sbjct: 85  STFWETMGREWTGIDILRTDKFYLLMRRFC 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,841,531
Number of Sequences: 5004
Number of extensions: 21043
Number of successful extensions: 153
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)