Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_H22
         (862 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0934 - 12513810-12513834,12513918-12513970,12514212-125145...   149   4e-36
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405...   147   9e-36
04_04_1687 - 35365766-35366356,35367137-35368135                       29   6.3  

>03_02_0934 -
           12513810-12513834,12513918-12513970,12514212-12514525,
           12514608-12514730,12515710-12515821
          Length = 208

 Score =  149 bits (360), Expect = 4e-36
 Identities = 75/159 (47%), Positives = 90/159 (56%)
 Frame = +1

Query: 88  SLKLQKXLAASVMRCGXXXVWLXPNXIXEIANTNSRQNXRKXXXXGLVIKKPVAVHSRAR 267
           SLKLQK LAASV++CG   VWL PN + EI+  NSRQN RK    G +IKKP  +HSR+R
Sbjct: 3   SLKLQKRLAASVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSRSR 62

Query: 268 VRKNTEARXKGRXCGFGXXXGXAXARMPQKXLWVXXXXVXXXXXXXXXXXXXXDXXLYHS 447
            R+  EA+ KGR  G+G   G   AR+P K LW+    V              D  +YH 
Sbjct: 63  ARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHD 122

Query: 448 LYMKAXGXVFKNXRVLXEXXHXXXAEXAXXXXLSDXAEA 564
           +YMK  G +FKN RVL E  H   AE A    LSD  EA
Sbjct: 123 MYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEA 161


>03_05_0125 -
           21039767-21039791,21039876-21039922,21040220-21040533,
           21040613-21040735,21041599-21041710
          Length = 206

 Score =  147 bits (357), Expect = 9e-36
 Identities = 74/159 (46%), Positives = 90/159 (56%)
 Frame = +1

Query: 88  SLKLQKXLAASVMRCGXXXVWLXPNXIXEIANTNSRQNXRKXXXXGLVIKKPVAVHSRAR 267
           SLKLQK LA+SV++CG   VWL PN + EI+  NSRQN RK    G +IKKP  +HSR+R
Sbjct: 3   SLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIKKPQKIHSRSR 62

Query: 268 VRKNTEARXKGRXCGFGXXXGXAXARMPQKXLWVXXXXVXXXXXXXXXXXXXXDXXLYHS 447
            R+  EA+ KGR  G+G   G   AR+P K LW+    V              D  +YH 
Sbjct: 63  ARRAHEAKQKGRHSGYGKRRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHD 122

Query: 448 LYMKAXGXVFKNXRVLXEXXHXXXAEXAXXXXLSDXAEA 564
           +YMK  G +FKN RVL E  H   AE A    LSD  EA
Sbjct: 123 MYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEA 161


>04_04_1687 - 35365766-35366356,35367137-35368135
          Length = 529

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +3

Query: 231 HQETCSSPLPRPCPQKHR 284
           H E C +PLP P P  HR
Sbjct: 53  HAEQCPAPLPDPLPSAHR 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,788,044
Number of Sequences: 37544
Number of extensions: 188612
Number of successful extensions: 269
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)