Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_H22
         (862 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   138   5e-33
Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z83120-6|CAB76722.1|  809|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  138 bits (334), Expect = 5e-33
 Identities = 69/159 (43%), Positives = 90/159 (56%)
 Frame = +1

Query: 88  SLKLQKXLAASVMRCGXXXVWLXPNXIXEIANTNSRQNXRKXXXXGLVIKKPVAVHSRAR 267
           +L+LQK LA++V++CG   VWL PN + EI+  NSRQ+ R+    GL+I+KPV VHSR R
Sbjct: 3   NLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSRFR 62

Query: 268 VRKNTEARXKGRXCGFGXXXGXAXARMPQKXLWVXXXXVXXXXXXXXXXXXXXDXXLYHS 447
            R+  EAR KGR  G+G   G A ARMP+K LW+    V              D  LYH 
Sbjct: 63  AREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHE 122

Query: 448 LYMKAXGXVFKNXRVLXEXXHXXXAEXAXXXXLSDXAEA 564
           LY++A G  FKN + L E       E      L+D A+A
Sbjct: 123 LYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQAQA 161


>Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical
           protein F15D3.2 protein.
          Length = 376

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -1

Query: 628 PPSWRQYVPRGACXPPV 578
           P SW QY P+G C  PV
Sbjct: 221 PNSWHQYQPKGTCIQPV 237


>Z83120-6|CAB76722.1|  809|Caenorhabditis elegans Hypothetical
           protein R06A4.9 protein.
          Length = 809

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 555 G*GPPQYSTGGXXAPRGTYCRQEG 626
           G GPPQ S GG    +G+Y  Q+G
Sbjct: 642 GQGPPQGSYGGQGTLQGSYASQQG 665


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,777,352
Number of Sequences: 27780
Number of extensions: 136283
Number of successful extensions: 172
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)