Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_H20
         (978 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    67   3e-12
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    65   1e-11
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    63   5e-11
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   4.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   5.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   5.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   9.3  

>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 67.3 bits (157), Expect = 3e-12
 Identities = 34/85 (40%), Positives = 51/85 (60%)
 Frame = +1

Query: 130 MRXVAAYLLAVLGGXTTPAXADVEXXLXSVGIQAXRXXLXXVXXELXGXXVEQLIAAGXX 309
           M+ +AAYLL  +GG  +P+ +D+E  L +VGI+A    +  +  EL G  +++LIAAG  
Sbjct: 1   MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNE 60

Query: 310 XLSSMPVXGGAPXAXXAAXPAAAXA 384
            L+++P  G A  A  AA   AA A
Sbjct: 61  KLATVPTGGAASAAPAAAAGGAAPA 85


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 65.3 bits (152), Expect = 1e-11
 Identities = 33/85 (38%), Positives = 51/85 (60%)
 Frame = +1

Query: 130 MRXVAAYLLAVLGGXTTPAXADVEXXLXSVGIQAXRXXLXXVXXELXGXXVEQLIAAGXX 309
           M+ +AAYLL  +GG  +P+ +D+E  L +VGI++    +  +  EL G  +++LIAAG  
Sbjct: 1   MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNE 60

Query: 310 XLSSMPVXGGAPXAXXAAXPAAAXA 384
            L+++P  G A  A  AA   AA A
Sbjct: 61  KLATVPSGGAAAAAAPAAAGGAAPA 85


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 63.3 bits (147), Expect = 5e-11
 Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
 Frame = +1

Query: 130 MRXVAAYLLAVLGGXTTPAXADVEXXLXSVGIQAXRXXLXXVXXELXGXXVEQLIAAGXX 309
           M+ +AAYLL  +GG  +P+ +D+E  L +VGI+A    +  +  EL G  +E+LIAAG  
Sbjct: 1   MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNE 60

Query: 310 XLSSMPVXG--GAPXAXXAAXPAAAXA 384
            LS++P  G    P A  AA   A  A
Sbjct: 61  KLSTVPSAGAVATPAAGGAAGAEATSA 87


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.4 bits (48), Expect(2) = 4.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 573 PPPXPPXPPS 602
           PPP PP PP+
Sbjct: 189 PPPPPPPPPA 198



 Score = 21.4 bits (43), Expect(2) = 4.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 558 YFXXPPPPXPP 590
           Y   PPPP PP
Sbjct: 187 YNPPPPPPPPP 197


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 14/52 (26%), Positives = 17/52 (32%)
 Frame = +2

Query: 791 PPRPXXGPXSPXPPPPXXAXXXXXXXXXXXXXXXXXXSHAPXAAPLXPQXFP 946
           PPRP   P SP   PP  +                    +P +AP  P   P
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVP 195


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +2

Query: 791 PPRPXXGPXSPXPPPPXXA 847
           PP P  G   P PPPP  A
Sbjct: 753 PPAPIMGGPPPPPPPPGVA 771



 Score = 23.4 bits (48), Expect(2) = 8.0
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 573 PPPXPPXPPS 602
           PPP PP PP+
Sbjct: 775 PPPPPPPPPA 784



 Score = 20.6 bits (41), Expect(2) = 8.0
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 570 PPPPXPP 590
           PPPP PP
Sbjct: 762 PPPPPPP 768


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 780 LPNXPPDPXXAPXPPHPPHP 839
           +P  PP P  AP PP  P P
Sbjct: 463 MPAAPPLPPAAPAPPPAPAP 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,660,432
Number of Sequences: 5004
Number of extensions: 16554
Number of successful extensions: 101
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 503290872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)