Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_H17
         (885 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U14635-1|AAC46657.2|  448|Caenorhabditis elegans Hypothetical pr...    31   0.83 
U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical pr...    30   2.5  
D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like prot...    29   3.3  
AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a...    29   3.3  
AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a...    29   3.3  
Z69662-1|CAA93499.1|  359|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical...    28   7.7  

>U14635-1|AAC46657.2|  448|Caenorhabditis elegans Hypothetical
           protein C27H5.3 protein.
          Length = 448

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
 Frame = -3

Query: 874 GGXGXXPXXGNXXXGLXKGPPFXXG-KXGXRIXXXG--RXGKRGGXGGXXQGGNXGXFXX 704
           GG G     G    G   G  F  G + G R    G  R G RGG  G  +GG+ G F  
Sbjct: 323 GGYGGGGGRGGFDGGRGGGGGFRGGDRGGFRGGDRGGFRGGDRGGFRGGDRGGDRGGFRG 382

Query: 703 XWGV 692
             GV
Sbjct: 383 GRGV 386


>U58755-7|AAB00696.1|  136|Caenorhabditis elegans Hypothetical
           protein C34D4.11 protein.
          Length = 136

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 19/53 (35%), Positives = 19/53 (35%)
 Frame = -3

Query: 874 GGXGXXPXXGNXXXGLXKGPPFXXGKXGXRIXXXGRXGKRGGXGGXXQGGNXG 716
           GG G     G    G   G     G  G R    G  G RGG GG   GG  G
Sbjct: 82  GGNGGGGNGGGGRGGGGGGGGGRGGGGGGRGGGGGGGGGRGGGGGGRGGGGRG 134


>D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like protein
           protein.
          Length = 346

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 772 GRXGKRGGXGGXXQGGNXGXFXXXWG 695
           G  G  GG GG  QGG  G +   WG
Sbjct: 236 GGPGAYGGPGGGGQGGYGGDYGGGWG 261


>AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform c protein.
          Length = 308

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 772 GRXGKRGGXGGXXQGGNXGXFXXXWG 695
           G  G  GG GG  QGG  G +   WG
Sbjct: 198 GGPGAYGGPGGGGQGGYGGDYGGGWG 223


>AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform a protein.
          Length = 346

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -3

Query: 772 GRXGKRGGXGGXXQGGNXGXFXXXWG 695
           G  G  GG GG  QGG  G +   WG
Sbjct: 236 GGPGAYGGPGGGGQGGYGGDYGGGWG 261


>Z69662-1|CAA93499.1|  359|Caenorhabditis elegans Hypothetical
           protein F56D5.1 protein.
          Length = 359

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 823 KGPPFXXGKXGXRIXXXGRXGKRGGXGGXXQGGNXG 716
           KGPP   G+        G+ G++GG GG  + G  G
Sbjct: 222 KGPPGNSGRSSNIRGPSGKPGQQGGIGGTGKFGKYG 257


>AL032637-18|CAE17998.1|  193|Caenorhabditis elegans Hypothetical
           protein Y43F8C.20 protein.
          Length = 193

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 18/52 (34%), Positives = 19/52 (36%)
 Frame = -3

Query: 871 GXGXXPXXGNXXXGLXKGPPFXXGKXGXRIXXXGRXGKRGGXGGXXQGGNXG 716
           G G     G    G  +GPP   G  G         G RGG GG   GG  G
Sbjct: 130 GGGGGGRGGGGRGGDGRGPP---GSNGGGDWGGNGGGGRGGGGGRGGGGGGG 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,064,413
Number of Sequences: 27780
Number of extensions: 98240
Number of successful extensions: 396
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)