Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_H16
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.70 
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.93 
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    27   2.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 15/46 (32%), Positives = 16/46 (34%)
 Frame = +3

Query: 774 TTDRGSKKRRXXXPXKPPXPXXPLPNXPXCPTPXPAQXPLGXPXPP 911
           T +   K      P  PP    P P     P P PA    G P PP
Sbjct: 720 TVEEQQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765



 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/30 (36%), Positives = 12/30 (40%)
 Frame = +3

Query: 822 PPXPXXPLPNXPXCPTPXPAQXPLGXPXPP 911
           P  P  P+   P  P P P     G P PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 14/49 (28%), Positives = 19/49 (38%)
 Frame = +3

Query: 771 PTTDRGSKKRRXXXPXKPPXPXXPLPNXPXCPTPXPAQXPLGXPXPPXQ 917
           PT++          P +P     PLPN P    P P + PL     P +
Sbjct: 85  PTSEASKPLLNELVPEEPLPREPPLPNEPVPEEPLPGEPPLPDEPVPEE 133


>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/44 (29%), Positives = 17/44 (38%)
 Frame = +3

Query: 780 DRGSKKRRXXXPXKPPXPXXPLPNXPXCPTPXPAQXPLGXPXPP 911
           DR S K     P        P+P  P  P+    + P+  P PP
Sbjct: 134 DRASSKPVLQFPYSSVAALTPVPKKPSKPSKPRKKVPVSHPLPP 177


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +3

Query: 813 PXKPPXPXXPLPNXPXCPTPXPAQXPLGXPXPP 911
           P  PP P    P+ P  P P PA  P   P PP
Sbjct: 444 PAAPPLP----PSAPIAP-PLPAGMPAAPPLPP 471


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,294,757
Number of Sequences: 5004
Number of extensions: 13569
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)