Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_H16
(922 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 35 0.094
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 34 0.16
AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical... 33 0.29
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr... 32 0.66
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 32 0.66
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 31 1.2
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 31 1.2
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 31 1.5
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr... 30 2.0
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 30 2.7
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 30 2.7
Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical pr... 29 3.5
V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein ( Caeno... 29 3.5
J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein ( C.ele... 29 3.5
AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen stru... 29 3.5
U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin cyt... 29 4.7
U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin cyt... 29 4.7
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 29 4.7
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 29 4.7
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 29 4.7
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 29 6.2
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 29 6.2
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 6.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 6.2
U27312-9|AAA68252.1| 239|Caenorhabditis elegans Hypothetical pr... 29 6.2
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 29 6.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 6.2
Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical pr... 28 8.2
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 28 8.2
AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen prot... 28 8.2
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 34.7 bits (76), Expect = 0.094
Identities = 14/33 (42%), Positives = 14/33 (42%)
Frame = +3
Query: 813 PXKPPXPXXPLPNXPXCPTPXPAQXPLGXPXPP 911
P PP P P P CP P P P P PP
Sbjct: 55 PPPPPCPAQFCPPPPICPPPPPPPMPCPPPPPP 87
Score = 25.8 bits (54), Expect(2) = 2.0
Identities = 11/29 (37%), Positives = 12/29 (41%)
Frame = -3
Query: 353 PPFXXXRXPPXPPVPXXPXLPXPPTXXXP 267
PP PP PP+P P P P P
Sbjct: 66 PPPPICPPPPPPPMPCPPPPPPMPRPSCP 94
Score = 23.0 bits (47), Expect(2) = 2.0
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -3
Query: 491 PAPXPXPXPXXPXPXPAQ 438
P P P P P P PAQ
Sbjct: 46 PMPMPMPVCPPPPPCPAQ 63
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 33.9 bits (74), Expect = 0.16
Identities = 21/76 (27%), Positives = 22/76 (28%)
Frame = -3
Query: 491 PAPXPXPXPXXPXPXPAQGXXXXXXXXXXXXLVSPXXXXXXFFXXVPPFXXXRXPPXPPV 312
P+ P P P P P SP PP PP PP
Sbjct: 206 PSGPPSPGPVDPSEDPKPSEPPSPGPVDPSDEPSPSDPPGPPGPPGPPTRRPPGPPGPPT 265
Query: 311 PXXPXLPXPPTXXXPG 264
P P PPT PG
Sbjct: 266 RRPPGPPGPPTRRPPG 281
Score = 31.1 bits (67), Expect = 1.2
Identities = 25/104 (24%), Positives = 30/104 (28%)
Frame = +3
Query: 600 PXXPXKXX*PXDPXXXQRAXXXPXSPTKXPQXGXNPDXGRPP*XRXXTXXTXHXXXXPTT 779
P P DP + P P+ P P G P + P
Sbjct: 175 PPSPGPVDPSEDPQPSGSSSPGPVDPSDEPSPSGPPSPG-PVDPSEDPKPSEPPSPGPVD 233
Query: 780 DRGSKKRRXXXPXKPPXPXXPLPNXPXCPTPXPAQXPLGXPXPP 911
S + P PP P P P P P + P G P PP
Sbjct: 234 P--SDEPSPSDPPGPPGPPGPPTRRPPGPPGPPTRRPPGPPGPP 275
Score = 29.5 bits (63), Expect = 3.5
Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Frame = +2
Query: 626 TPGPXXXAEGXLXAXKPYXGPPXRXKPRXGPAPLXE--XPNXXDXPXPXVPXNRPGX*KA 799
+PGP +E + +P P P GP E P+ P P P + P
Sbjct: 150 SPGPVDPSEDPQPSVEPSEDPQPSGPPSPGPVDPSEDPQPSGSSSPGPVDPSDEPSPSGP 209
Query: 800 PGAXPXQTS 826
P P S
Sbjct: 210 PSPGPVDPS 218
>AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical
protein Y37A1B.11 protein.
Length = 691
Score = 33.1 bits (72), Expect = 0.29
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +3
Query: 813 PXKPPXPXXPLPNXPXCPTPXPAQXPLGXPXPP 911
P PP P P P P P P P + P P PP
Sbjct: 546 PTPPPPPREPTPREPT-PEPEPVREPTPPPPPP 577
>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical protein
R08B4.1b protein.
Length = 1160
Score = 31.9 bits (69), Expect = 0.66
Identities = 22/72 (30%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Frame = +1
Query: 283 GGXGXXGXKGTGGXGGXRXXXKGGT--XXKXXXXXXXGETRXXXQXXXXXXCXPWAGXGX 456
GG G G G+GG GG GG+ G AG G
Sbjct: 787 GGGGGGGNGGSGGGGGGGGGGSGGSGGGGSNSNSGGGGGNGGGGNGGGGNGNGGGAGDGN 846
Query: 457 GXXGXGSGXGAG 492
G G G+G GAG
Sbjct: 847 GGAGAGNGNGAG 858
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 31.9 bits (69), Expect = 0.66
Identities = 16/32 (50%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = +3
Query: 822 PPXPXXPLP-NXPXCPTPXPAQXP-LGXPXPP 911
PP P PLP N P P P P LG P PP
Sbjct: 561 PPPPPPPLPQNLSGAPPPPPPPPPMLGGPPPP 592
Score = 28.7 bits (61), Expect = 6.2
Identities = 19/70 (27%), Positives = 20/70 (28%)
Frame = -3
Query: 491 PAPXPXPXPXXPXPXPAQGXXXXXXXXXXXXLVSPXXXXXXFFXXVPPFXXXRXPPXPPV 312
P P P P P P P G P PP PP PP+
Sbjct: 531 PRPAPPPVSSIPPPPPIAGLLAANGTNVPIPPPPPPPLPQNLSGAPPP-----PPPPPPM 585
Query: 311 PXXPXLPXPP 282
P P PP
Sbjct: 586 LGGPPPPPPP 595
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 31.1 bits (67), Expect = 1.2
Identities = 27/116 (23%), Positives = 33/116 (28%)
Frame = +2
Query: 458 GXXGXXPDXARGXXGXXLGGXAGGGGMXXSAPLXXXXXXXGXXQGGXPXXPXXXXVTPGP 637
G G G G GG A GGG + G + G P P P
Sbjct: 85 GGAGGGGGYGAGGGGGGGGGEAAGGGGGCTGCCNPGPPGPGG-RPGKPGTPGKPGAPGNP 143
Query: 638 XXXAEGXLXAXKPYXGPPXRXKPRXGPAPLXEXPNXXDXPXPXVPXNRPGX*KAPG 805
+G +P PP + P P P + P P P PG
Sbjct: 144 GASGKGAAAPCEPSTPPPCQPCPAGPPGPPGPDGTPGEPGGPG-PAGSPAGPSGPG 198
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = -3
Query: 356 VPPFXXXRXPPXPPVPXXPXLPXPPTXXXP 267
VPP PP P +P P P PP P
Sbjct: 698 VPPMFNLNAPPPPGIPGYPPAPPPPGVGPP 727
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 30.7 bits (66), Expect = 1.5
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = -1
Query: 910 GGXGXPRGXC--AGXGVGQXGXLGSGXXGXGGLXGXXXRRFLXPRSVVG 770
GG G G C G G G G G G G GG G R+ +VVG
Sbjct: 154 GGCGGGGGGCGGGGGGCGGGGGGGCGGGGGGGCGGGCGRKKREAINVVG 202
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -1
Query: 910 GGXGXPRGXCAGXGVGQXGXLGSGXXGXGG 821
GG G G C G G G G G G G GG
Sbjct: 124 GGGGGCGGGCGGGGGGGCGGGGGGGCGGGG 153
>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
F46C3.3 protein.
Length = 2557
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +3
Query: 801 RXXXPXKPPXPXXPLPNXP-XCPTPXPAQXPLGXPXPP 911
R P +PP P+P+ P TP P P P PP
Sbjct: 1694 RPITPAQPPITQSPVPSEPVVVRTPSPVPQPTPPPPPP 1731
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/33 (42%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Frame = +3
Query: 822 PPXPXXP---LPNXPXCPTPXPAQXPLGXPXPP 911
PP P P P P CP P P P P PP
Sbjct: 46 PPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPP 78
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.9 bits (64), Expect = 2.7
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = +3
Query: 774 TTDRGSKKRRXXXPXKPPXPXXPLPNXPXCPTPXP--AQXPLGXPXP 908
+T R S P PP P L P P P P ++ P G P P
Sbjct: 1329 STSRSSSPSPPPPPPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLP 1375
>Z68301-5|CAA92620.1| 301|Caenorhabditis elegans Hypothetical
protein W01B6.7 protein.
Length = 301
Score = 29.5 bits (63), Expect = 3.5
Identities = 24/97 (24%), Positives = 27/97 (27%)
Frame = +2
Query: 512 GGXAGGGGMXXSAPLXXXXXXXGXXQGGXPXXPXXXXVTPGPXXXAEGXLXAXKPYXGPP 691
GG GGGG G G P P P +G +P PP
Sbjct: 88 GGGGGGGGGGCDGCCNPGPPGPGGSPG-KPGKPGKPGAPGAPGNPGKGASAPCEPVTQPP 146
Query: 692 XRXKPRXGPAPLXEXPNXXDXPXPXVPXNRPGX*KAP 802
+ P P P P P P PG P
Sbjct: 147 CQPCPGGPPGP----AGPAGPPGPPGPDGNPGSPAGP 179
>V00148-1|CAA23464.1| 301|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-2 coding for a collagen.
).
Length = 301
Score = 29.5 bits (63), Expect = 3.5
Identities = 24/97 (24%), Positives = 27/97 (27%)
Frame = +2
Query: 512 GGXAGGGGMXXSAPLXXXXXXXGXXQGGXPXXPXXXXVTPGPXXXAEGXLXAXKPYXGPP 691
GG GGGG G G P P P +G +P PP
Sbjct: 88 GGGGGGGGGGCDGCCNPGPPGPGGSPG-KPGKPGKPGAPGAPGNPGKGASAPCEPVTQPP 146
Query: 692 XRXKPRXGPAPLXEXPNXXDXPXPXVPXNRPGX*KAP 802
+ P P P P P P PG P
Sbjct: 147 CQPCPGGPPGP----AGPAGPPGPPGPDGNPGSPAGP 179
>J01048-1|AAA27990.1| 301|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 2 (col-2) gene, complete
cds. ).
Length = 301
Score = 29.5 bits (63), Expect = 3.5
Identities = 24/97 (24%), Positives = 27/97 (27%)
Frame = +2
Query: 512 GGXAGGGGMXXSAPLXXXXXXXGXXQGGXPXXPXXXXVTPGPXXXAEGXLXAXKPYXGPP 691
GG GGGG G G P P P +G +P PP
Sbjct: 88 GGGGGGGGGGCDGCCNPGPPGPGGSPG-KPGKPGKPGAPGAPGNPGKGASAPCEPVTQPP 146
Query: 692 XRXKPRXGPAPLXEXPNXXDXPXPXVPXNRPGX*KAP 802
+ P P P P P P PG P
Sbjct: 147 CQPCPGGPPGP----AGPAGPPGPPGPDGNPGSPAGP 179
>AY347575-1|AAP97869.1| 301|Caenorhabditis elegans COLlagen
structural gene, probabledorsal and ventral cuticle
component, from embryo to adult,but maximal in dauer
(28.0 kD) (col-2) protein.
Length = 301
Score = 29.5 bits (63), Expect = 3.5
Identities = 24/97 (24%), Positives = 27/97 (27%)
Frame = +2
Query: 512 GGXAGGGGMXXSAPLXXXXXXXGXXQGGXPXXPXXXXVTPGPXXXAEGXLXAXKPYXGPP 691
GG GGGG G G P P P +G +P PP
Sbjct: 88 GGGGGGGGGGCDGCCNPGPPGPGGSPG-KPGKPGKPGAPGAPGNPGKGASAPCEPVTQPP 146
Query: 692 XRXKPRXGPAPLXEXPNXXDXPXPXVPXNRPGX*KAP 802
+ P P P P P P PG P
Sbjct: 147 CQPCPGGPPGP----AGPAGPPGPPGPDGNPGSPAGP 179
>U58751-5|AAN84882.1| 781|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform b
protein.
Length = 781
Score = 29.1 bits (62), Expect = 4.7
Identities = 22/85 (25%), Positives = 26/85 (30%), Gaps = 6/85 (7%)
Frame = +3
Query: 666 PXSPTKXPQXGXNPDXGRPP*XRXXTXXTXHXXXXPTTDR-GSKKRRXXXPXKPPXPXXP 842
P PT+ G P PP T P G+ + R PP P P
Sbjct: 558 PPPPTRVESHGLAPARPPPPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPPPPP 617
Query: 843 -----LPNXPXCPTPXPAQXPLGXP 902
P P P P P+G P
Sbjct: 618 QSFGMAPISSAAPPPPPPPPPMGLP 642
>U58751-4|AAN84881.1| 607|Caenorhabditis elegans Wasp (actin
cytoskeleton modulator)homolog protein 1, isoform a
protein.
Length = 607
Score = 29.1 bits (62), Expect = 4.7
Identities = 22/85 (25%), Positives = 26/85 (30%), Gaps = 6/85 (7%)
Frame = +3
Query: 666 PXSPTKXPQXGXNPDXGRPP*XRXXTXXTXHXXXXPTTDR-GSKKRRXXXPXKPPXPXXP 842
P PT+ G P PP T P G+ + R PP P P
Sbjct: 384 PPPPTRVESHGLAPARPPPPPPSSGTRGIAPSRPLPQAPNYGTPENRPHAVPPPPPPPPP 443
Query: 843 -----LPNXPXCPTPXPAQXPLGXP 902
P P P P P+G P
Sbjct: 444 QSFGMAPISSAAPPPPPPPPPMGLP 468
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +3
Query: 780 DRGSKKRRXXXPXK-PPXPXXPLP--NXPXCPTPXPAQXPLGXPXPP 911
++ S++++ P + PP P PLP N P PTP P PP
Sbjct: 58 EQSSRQQQVGRPTESPPLPPPPLPLSNPPAKPTPPPPPPKPTIRPPP 104
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +3
Query: 780 DRGSKKRRXXXPXK-PPXPXXPLP--NXPXCPTPXPAQXPLGXPXPP 911
++ S++++ P + PP P PLP N P PTP P PP
Sbjct: 280 EQSSRQQQVGRPTESPPLPPPPLPLSNPPAKPTPPPPPPKPTIRPPP 326
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +3
Query: 831 PXXPLPNXPXCPTPXPAQXPLGXPXPP 911
P P P CP P PA P P PP
Sbjct: 123 PAPPNPPRTCCPPPTPAAPPPPPPPPP 149
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Frame = +3
Query: 786 GSKKRRXXXPXKP--PXPXXPLPNXPXCPTPXPA----QXPLGXPXPP 911
G+ R P +P P P P P P P P + PLG P PP
Sbjct: 117 GNPGRPPKEPCEPITPPPCKPCPEGPPGPAGPPGPQGNKGPLGPPGPP 164
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +3
Query: 792 KKRRXXXPXKPPXPXXPLPNXPXCPTPXPAQXPLGXPXP 908
+K R PP P +P P +P P + P+ P P
Sbjct: 129 RKSRAGGSSPPPPPPPRVPRTPPPRSPPPRRPPMTPPSP 167
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +3
Query: 813 PXKPPXPXXPLPNXPXCPTPXPAQXPLGXPXPP 911
P PP P+ P P P P P P PP
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +3
Query: 813 PXKPPXPXXPLPNXPXCPTPXPAQXPLGXPXPP 911
P PP P+ P P P P P P PP
Sbjct: 744 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
>U27312-9|AAA68252.1| 239|Caenorhabditis elegans Hypothetical
protein F26A1.11 protein.
Length = 239
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 777 TDRGSKKRRXXXPXKPPXPXXPLPNXPXCPTPXPAQXP 890
T+RG+ P +PP P P P+ P P P Q P
Sbjct: 21 TNRGTSLLEAIRPPRPPRP--PSPSRPQRPPPSRPQRP 56
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Frame = +3
Query: 786 GSKKRRXXXPXKP--PXPXXPLPNXPXCPTPXPA----QXPLGXPXPP 911
G+ R P +P P P P P P P P + PLG P PP
Sbjct: 119 GNPGRPPKEPCEPLTPPPCKPCPEGPPGPAGPPGPDGNKGPLGPPGPP 166
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +3
Query: 813 PXKPPXPXXPLPNXPXCPTPXPAQXPLGXPXPP 911
P PP P+ P P P P P P PP
Sbjct: 327 PPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 359
>Z81560-2|CAB04547.1| 1021|Caenorhabditis elegans Hypothetical
protein K02E2.2 protein.
Length = 1021
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 353 PPFXXXRXPPXPPVPXXPXLP 291
PPF PP PPVP P P
Sbjct: 778 PPFFALPVPPPPPVPPPPPPP 798
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 28.3 bits (60), Expect = 8.2
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +3
Query: 813 PXKPPXPXXPLPNXPXCPTPXPAQXPLGXPXPP 911
P P P +P P P Q P G P PP
Sbjct: 689 PSDTPAPSTSVPPPTSVQPPQPQQPPQGPPGPP 721
>AF040642-7|AAB94952.1| 329|Caenorhabditis elegans Collagen protein
68 protein.
Length = 329
Score = 28.3 bits (60), Expect = 8.2
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -1
Query: 580 PVPXXAPXQGGGXSHXPPXRXPP 512
P P P GGG H PP R P
Sbjct: 305 PGPPGQPGAGGGCDHCPPPRTAP 327
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,750,589
Number of Sequences: 27780
Number of extensions: 162037
Number of successful extensions: 1589
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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