Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_H14
         (909 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...    67   4e-12
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc...    65   1e-11
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    27   4.9  
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    26   8.5  

>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 66.9 bits (156), Expect = 4e-12
 Identities = 38/92 (41%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
 Frame = +2

Query: 206 PGXPTVSKXELRXQLAKMYKVTPDXXXXXXXXXXXXXXXXXXXALIYDTLDLXKKFEPKH 385
           PG   +SK E+R +LA+MYK   +                   ALIYD+ +  KKFEP +
Sbjct: 30  PGKANLSKNEIREKLAQMYKTDSECVQAFGLRTHFGGGRSTGFALIYDSTESMKKFEPHY 89

Query: 386 RLARHGLYEK-KRPTRKQXKERKNRMKKVRGT 478
           RL R G  E  ++  R+Q K+RKNR KKV GT
Sbjct: 90  RLVRVGQAEPIQKVARQQRKQRKNRGKKVFGT 121


>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 37/92 (40%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
 Frame = +2

Query: 206 PGXPTVSKXELRXQLAKMYKVTPDXXXXXXXXXXXXXXXXXXXALIYDTLDLXKKFEPKH 385
           PG   +SK +LR +L +MYK                       ALIYD ++  KKFEP +
Sbjct: 30  PGKANISKNDLREKLGQMYKTDASAVQAFGLRTHYGGGRTTGFALIYDDVEAMKKFEPHY 89

Query: 386 RLARHGLYEK-KRPTRKQXKERKNRMKKVRGT 478
           RL R G  E  ++  R+Q K+RKNR KKV GT
Sbjct: 90  RLVRVGHAEPIQKVARQQRKQRKNRGKKVFGT 121


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 368 KFEPKHRLARHGLYEKKRPTRKQXKERKNRMKK 466
           K+ P  R    G + +KR  RK+  E+KN   K
Sbjct: 539 KYRPNARKPLVGRHREKRQLRKEKPEKKNNSTK 571


>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 280 SVRIRFQXKLRRWQVNWIRFDLRHTRSGQEVRAQ-AQVSPPRXVREEEA 423
           S   R + +LRR +      DLR +R G E RA+ A+   PR V E  A
Sbjct: 385 SEAFRRRQELRRERRRQAEKDLRLSRMGAEKRAKLAEKDRPRDVAERVA 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,722,345
Number of Sequences: 5004
Number of extensions: 23647
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)