Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_H13
         (879 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0442 + 8529235-8529620,8529721-8529888,8529993-8530158,853...    29   4.9  

>03_02_0442 +
           8529235-8529620,8529721-8529888,8529993-8530158,
           8530579-8530689,8530845-8530993,8531087-8531217,
           8531322-8531421,8532060-8532366
          Length = 505

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +1

Query: 367 LRSRCSKGKSGKRXTV-DNXRXFIXTVKKGDVLITGRVCRGIDXACRDYDIGLL 525
           LR   S GKSG    +  + R  I TVKK +V +  R+ R      R Y   LL
Sbjct: 208 LRELASPGKSGSCFFITQDDRFMIKTVKKSEVKVLIRMLRSYYEHVRQYKSTLL 261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,590,135
Number of Sequences: 37544
Number of extensions: 181267
Number of successful extensions: 272
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)