Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_H11
(938 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 41 2e-04
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.058
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.077
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.18
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 31 0.31
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.41
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 29 1.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.7
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 2.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 2.9
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 23 8.2
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 41.1 bits (92), Expect = 2e-04
Identities = 45/183 (24%), Positives = 49/183 (26%), Gaps = 16/183 (8%)
Frame = +2
Query: 431 PPXGPPXFFXSXGGGGGGXXXKKXLPPPPXNHXRXKXXXXX------FPPPXXPPPQKXX 592
PP PP S + PPPP R K PPP PP
Sbjct: 290 PPLPPPSSRVSAAALAANKK-RPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAA 348
Query: 593 XXXXXXXXXRGXXTXPXPKRGXHPPXEXXXPKXXXSXXXPPPPXPXXP-RXGXXXXXXXX 769
R P P+ + + PP P P P R
Sbjct: 349 GSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGN 408
Query: 770 PQXXXTXPPP-----PLDAXXXXXXXXPXXXPXXXP--PP-PPXXXXXPP-PPXXPXXPP 922
T P P P A P P P PP PP PP P P PP
Sbjct: 409 ASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPP 468
Query: 923 XPP 931
PP
Sbjct: 469 LPP 471
Score = 40.3 bits (90), Expect = 4e-04
Identities = 41/177 (23%), Positives = 43/177 (24%), Gaps = 8/177 (4%)
Frame = +2
Query: 422 KXPPPXGPPXFFXSXGGGGGGXXXKKXLPPPPXNHXRXKXXXXXFPP-----PXXPPPQK 586
K PPP PP G LPPPP PP P PPP+
Sbjct: 309 KRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRS 368
Query: 587 XXXXXXXXXXX---RGXXTXPXPKRGXHPPXEXXXPKXXXSXXXPPPPXPXXPRXGXXXX 757
R P P P + PP P P
Sbjct: 369 APSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAP 428
Query: 758 XXXXPQXXXTXPPPPLDAXXXXXXXXPXXXPXXXPPPPPXXXXXPPPPXXPXXPPXP 928
P PP L P P P P P PP P PP P
Sbjct: 429 PSLPPSA-----PPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAP 480
Score = 30.7 bits (66), Expect = 0.31
Identities = 18/56 (32%), Positives = 18/56 (32%)
Frame = -3
Query: 483 PPPPPPXEXKXXGGPXGGGXFXXPLXWGXPXPXXPPFXXXXXXXGAXPXGGGXPXP 316
PPPPPP P G G L P P PP P G P P
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSL----PPPPPPPRSNAAGSIPLPPQGRSAPPP 363
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.1 bits (72), Expect = 0.058
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 860 PPPPPXXXXXPPPPXXPXXPPXPP 931
P PPP PPPP P P PP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPP 1728
Score = 30.7 bits (66), Expect = 0.31
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = +3
Query: 837 PXPXPXXPPPPXXXXXXXPPXPXXPXXXPPPP 932
P P P PPP PP P P PPPP
Sbjct: 1707 PPPPPMSVPPPPSA----PPMPAGPPSAPPPP 1734
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/54 (25%), Positives = 16/54 (29%)
Frame = +2
Query: 770 PQXXXTXPPPPLDAXXXXXXXXPXXXPXXXPPPPPXXXXXPPPPXXPXXPPXPP 931
P + PP + A P PP P PPPP P P
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.7 bits (71), Expect = 0.077
Identities = 20/55 (36%), Positives = 20/55 (36%), Gaps = 8/55 (14%)
Frame = +2
Query: 791 PPPPLDAXXXXXXXXPXXXPXXXPPPPPXXXXXPPPPXXPXX--------PPXPP 931
PPPP A P P PPP P PPPP P PP PP
Sbjct: 732 PPPPPPAVIVPT---PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.5 bits (63), Expect = 0.72
Identities = 20/64 (31%), Positives = 20/64 (31%)
Frame = +2
Query: 710 PPPPXPXXPRXGXXXXXXXXPQXXXTXPPPPLDAXXXXXXXXPXXXPXXXPPPPPXXXXX 889
PPPP P P PPPP P PPPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP---------PPPPGVAGAGPPPPP----- 779
Query: 890 PPPP 901
PPPP
Sbjct: 780 PPPP 783
Score = 29.1 bits (62), Expect = 0.95
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +3
Query: 837 PXPXPXXPPPPXXXXXXXPPXPXXPXXXPPPP 932
P P P PP P PP P PPP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 25.8 bits (54), Expect = 8.8
Identities = 17/57 (29%), Positives = 19/57 (33%)
Frame = +2
Query: 638 PXPKRGXHPPXEXXXPKXXXSXXXPPPPXPXXPRXGXXXXXXXXPQXXXTXPPPPLD 808
P P G PP P + PPPP P G PQ P P +D
Sbjct: 754 PAPIMGG-PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQ---AEPEPKID 806
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.5 bits (68), Expect = 0.18
Identities = 28/128 (21%), Positives = 30/128 (23%), Gaps = 3/128 (2%)
Frame = +2
Query: 557 PPPXXPPPQKXXXXXXXXXXXRGXXTXPXPKRGXHPPX---EXXXPKXXXSXXXPPPPXP 727
P P PP P P PP P PP P P
Sbjct: 1086 PAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKP 1145
Query: 728 XXPRXGXXXXXXXXPQXXXTXPPPPLDAXXXXXXXXPXXXPXXXPPPPPXXXXXPPPPXX 907
P + PP+ A P P PPP P P
Sbjct: 1146 SVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSV 1205
Query: 908 PXXPPXPP 931
PP PP
Sbjct: 1206 -GVPPVPP 1212
Score = 30.3 bits (65), Expect = 0.41
Identities = 22/89 (24%), Positives = 23/89 (25%), Gaps = 1/89 (1%)
Frame = +2
Query: 665 PXEXXXPKXXXSXXXPPPPXPXXPRXGXXXXXXXXPQXXXTXPPP-PLDAXXXXXXXXPX 841
P P S PP P P P T PP P + P
Sbjct: 1007 PLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPV 1066
Query: 842 XXPXXXPPPPPXXXXXPPPPXXPXXPPXP 928
P P P PP P PP P
Sbjct: 1067 PAPSSEIPSIPAPSGAPPVPAPSGIPPVP 1095
Score = 29.5 bits (63), Expect = 0.72
Identities = 31/128 (24%), Positives = 31/128 (24%), Gaps = 4/128 (3%)
Frame = +2
Query: 557 PPPXXPPPQKXXXXXXXXXXXRGXXTXPXPKRGXHPPX--EXXXPKXXXSXXXPPPPXPX 730
P PP K G P P P P S PP P P
Sbjct: 1097 PSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPS 1156
Query: 731 X--PRXGXXXXXXXXPQXXXTXPPPPLDAXXXXXXXXPXXXPXXXPPPPPXXXXXPPPPX 904
P P PP P A P P PP P PP P
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVP----PVPPPSEAPPVPKPSVGVPPVPP 1212
Query: 905 XPXXPPXP 928
PP P
Sbjct: 1213 PSTAPPVP 1220
Score = 29.1 bits (62), Expect = 0.95
Identities = 34/143 (23%), Positives = 36/143 (25%), Gaps = 3/143 (2%)
Frame = +2
Query: 509 PPPXNHXRXKXXXXXFPPPXXPPPQKXXXXXXXXXXXRGXXTXPXPKRGXHPPXEXXXPK 688
PPP PP PP P PK P P
Sbjct: 970 PPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAP-----PV 1024
Query: 689 XXXSXXXPPPPXPXX-PRXGXXXXXXXXPQXXXTXP--PPPLDAXXXXXXXXPXXXPXXX 859
S PP P P P P+ P PPP+ A P P
Sbjct: 1025 PLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPA--PSGA 1082
Query: 860 PPPPPXXXXXPPPPXXPXXPPXP 928
PP P P P PP P
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVP 1105
Score = 27.5 bits (58), Expect = 2.9
Identities = 32/145 (22%), Positives = 34/145 (23%), Gaps = 7/145 (4%)
Frame = +2
Query: 515 PXNHXRXKXXXXXFPPPXXPPPQKXXXXXXXXXXXRGXXTXPXPKRGXHPPXEXXXPKXX 694
P N R PP PPP T PK HPP
Sbjct: 951 PSNDGRKASGPRPAAPPSIPPPLPVSNIL-------SSPTSEPPK--DHPPSAPLSKPVS 1001
Query: 695 XSXXXPPPPXPXXPRXGXXXXXXXXPQXXX-------TXPPPPLDAXXXXXXXXPXXXPX 853
S P P P+ P T PP P+ P
Sbjct: 1002 TSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPS 1061
Query: 854 XXPPPPPXXXXXPPPPXXPXXPPXP 928
PP P P P PP P
Sbjct: 1062 APPPVPAPSSEIPSIPAPSGAPPVP 1086
Score = 25.8 bits (54), Expect = 8.8
Identities = 11/32 (34%), Positives = 11/32 (34%)
Frame = +3
Query: 837 PXPXPXXPPPPXXXXXXXPPXPXXPXXXPPPP 932
P P P PP PP P PP P
Sbjct: 1209 PVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 30.7 bits (66), Expect = 0.31
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = -3
Query: 930 GGXGGXXGXXGGGGXXXXXGGGGGXXXGXXXGXXXXXXXXASSGGGG 790
GG G G GGG GG GG G SSGG G
Sbjct: 19 GGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.3 bits (65), Expect = 0.41
Identities = 13/28 (46%), Positives = 13/28 (46%)
Frame = +2
Query: 848 PXXXPPPPPXXXXXPPPPXXPXXPPXPP 931
P PPPPP PP P PP PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPP--PPPPP 30
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +1
Query: 844 PPXXXPPPPXXXXXXPPPXXXXPXXXXPPXP 936
PP PPPP PPP P PP P
Sbjct: 5 PPGNPPPPP------PPPGFEPPSQPPPPPP 29
Score = 25.8 bits (54), Expect = 8.8
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +2
Query: 836 PXXXPXXXPPPPPXXXXXPPPPXXP 910
P P PPPP PPP P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 25.8 bits (54), Expect = 8.8
Identities = 10/25 (40%), Positives = 10/25 (40%)
Frame = +3
Query: 837 PXPXPXXPPPPXXXXXXXPPXPXXP 911
P P PPPP PP P P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 23.4 bits (48), Expect(2) = 4.4
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3
Query: 486 NPPPPPP 466
NPPPPPP
Sbjct: 8 NPPPPPP 14
Score = 21.4 bits (43), Expect(2) = 4.4
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -3
Query: 483 PPPPPPXEXK 454
PPPPPP K
Sbjct: 25 PPPPPPGYVK 34
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = -3
Query: 930 GGXGGXXGXXGGGGXXXXXGGGGGXXXGXXXGXXXXXXXXASSGG 796
GG GG G GG GG G G G S GG
Sbjct: 145 GGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGG 189
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 1.7
Identities = 21/82 (25%), Positives = 23/82 (28%)
Frame = +2
Query: 686 KXXXSXXXPPPPXPXXPRXGXXXXXXXXPQXXXTXPPPPLDAXXXXXXXXPXXXPXXXPP 865
K S P P P P+ P+ PP P A P P PP
Sbjct: 117 KSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIP-PPSPASAPPIPSKAPPI--PSSLPP 173
Query: 866 PPPXXXXXPPPPXXPXXPPXPP 931
P PP P P P
Sbjct: 174 PAQPAAPVKSPPSAPSLPSAVP 195
Score = 27.5 bits (58), Expect = 2.9
Identities = 23/85 (27%), Positives = 24/85 (28%), Gaps = 6/85 (7%)
Frame = +2
Query: 665 PXEXXXPKXXXSXXXPP---PPXPXXPRXGXXXXXXXX---PQXXXTXPPPPLDAXXXXX 826
P P S PP PP P P P + PPP A
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183
Query: 827 XXXPXXXPXXXPPPPPXXXXXPPPP 901
P PP PP PPPP
Sbjct: 184 PPSAPSLPSAVPPMPP---KVPPPP 205
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.9 bits (59), Expect = 2.2
Identities = 22/74 (29%), Positives = 22/74 (29%), Gaps = 1/74 (1%)
Frame = -3
Query: 930 GGXGGXXGXXGGGGXXXXXGGGGGXXXGXXXGXXXXXXXXASSGGG-GXVXFXWGXXXXX 754
G GG G GGG G GG G G GGG G G
Sbjct: 184 GHNGGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGG 243
Query: 753 XXXPXRGXXGXGGG 712
G G GGG
Sbjct: 244 PGGFGGGLGGFGGG 257
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.5 bits (58), Expect = 2.9
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +2
Query: 890 PPPPXXPXXPPXPP 931
PPPP P PP PP
Sbjct: 273 PPPPATPSQPPRPP 286
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 22.6 bits (46), Expect(2) = 8.2
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = -3
Query: 483 PPPPPPXE 460
PPPPPP E
Sbjct: 371 PPPPPPPE 378
Score = 21.4 bits (43), Expect(2) = 8.2
Identities = 6/7 (85%), Positives = 7/7 (100%)
Frame = -3
Query: 486 NPPPPPP 466
+PPPPPP
Sbjct: 369 SPPPPPP 375
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.153 0.552
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,959,716
Number of Sequences: 5004
Number of extensions: 35863
Number of successful extensions: 292
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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