Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_H10
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein S16|Sc...   160   2e-40
SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein S16|Schizosa...   160   2e-40
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.4  
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    26   7.8  

>SPAC664.04c |rps1602|rps16-2, rps16|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 140

 Score =  160 bits (389), Expect = 2e-40
 Identities = 75/130 (57%), Positives = 97/130 (74%)
 Frame = +3

Query: 93  IQAVQVFGRKXTATAVAYCKRGXGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKXXFSMV 272
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G   F+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 273 DXRXXXXXXXXXAQVYAIRQAISKALIAFYQKYVDXASKKEIKDXLVQYDRSLLVADPRR 452
           D R         +Q+YAIRQAISKA++A+YQK+VD  SK E+K  L+ YDR+LLVADPRR
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120

Query: 453 CEPKKFGGPG 482
            EPKKFGG G
Sbjct: 121 MEPKKFGGHG 130


>SPBC18H10.14 |rps1601|rps16-1|40S ribosomal protein
           S16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 140

 Score =  160 bits (389), Expect = 2e-40
 Identities = 75/130 (57%), Positives = 97/130 (74%)
 Frame = +3

Query: 93  IQAVQVFGRKXTATAVAYCKRGXGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKXXFSMV 272
           +Q+VQ FG+K  ATAVA+CK G G+++VNG PL LV+P +L+ K+ EPIL+ G   F+ V
Sbjct: 1   MQSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGV 60

Query: 273 DXRXXXXXXXXXAQVYAIRQAISKALIAFYQKYVDXASKKEIKDXLVQYDRSLLVADPRR 452
           D R         +Q+YAIRQAISKA++A+YQK+VD  SK E+K  L+ YDR+LLVADPRR
Sbjct: 61  DIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLLVADPRR 120

Query: 453 CEPKKFGGPG 482
            EPKKFGG G
Sbjct: 121 MEPKKFGGHG 130


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -2

Query: 215 QQSGLNQVQWTAVYTQHSXTTLAIRNCGGGXLTSEYLDGLDGXT 84
           Q +G  Q+ W  V T      L + N       ++YLD +D  T
Sbjct: 29  QTNGEEQITWNVVSTDEPSAALYLTNFAVYPTVTQYLDTVDTST 72


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 31/122 (25%), Positives = 48/122 (39%)
 Frame = +3

Query: 114 GRKXTATAVAYCKRGXGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKXXFSMVDXRXXXX 293
           G++ ++ A      G G   VNG P D+   R++  K      L      +  +      
Sbjct: 12  GKRKSSKATVKMLPGTGKFYVNGSPFDVYFQRMVHRK-HAVYPLAACNRLTNYNVWATVH 70

Query: 294 XXXXXAQVYAIRQAISKALIAFYQKYVDXASKKEIKDXLVQYDRSLLVADPRRCEPKKFG 473
                 Q  A+  AISK+LI       + + K+ IK      D   ++ D R+ E KK G
Sbjct: 71  GGGPTGQSGAVHAAISKSLI-----LQEPSLKQVIK------DTHCVLNDKRKVERKKTG 119

Query: 474 GP 479
            P
Sbjct: 120 QP 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,882
Number of Sequences: 5004
Number of extensions: 36848
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)