Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_H10
(855 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein. 205 2e-52
BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16 p... 205 2e-52
BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16 p... 205 2e-52
AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16 p... 205 2e-52
BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein. 107 4e-23
AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens ... 84 5e-16
X98001-1|CAA66638.1| 331|Homo sapiens geranylgeranyl transferas... 31 7.1
U49245-1|AAA91473.1| 331|Homo sapiens geranylgeranyl transferas... 31 7.1
CR456941-1|CAG33222.1| 331|Homo sapiens RABGGTB protein. 31 7.1
BC020790-1|AAH20790.1| 331|Homo sapiens Rab geranylgeranyltrans... 31 7.1
AL357314-5|CAI22393.1| 331|Homo sapiens Rab geranylgeranyltrans... 31 7.1
AB209023-1|BAD92260.1| 320|Homo sapiens Rab geranylgeranyltrans... 31 7.1
Y08201-1|CAA69383.1| 331|Homo sapiens rab geranylgeranyl transf... 30 9.3
>M60854-1|AAA60583.1| 146|Homo sapiens RPS16 protein.
Length = 146
Score = 205 bits (500), Expect = 2e-52
Identities = 94/133 (70%), Positives = 112/133 (84%)
Frame = +3
Query: 84 RXPIQAVQVFGRKXTATAVAYCKRGXGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKXXF 263
+ P+Q+VQVFGRK TATAVA+CKRG G+++VNGRPL+++EPR LQYKL EP+LLLGK F
Sbjct: 4 KGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERF 63
Query: 264 SMVDXRXXXXXXXXXAQVYAIRQAISKALIAFYQKYVDXASKKEIKDXLVQYDRSLLVAD 443
+ VD R AQ+YAIRQ+ISKAL+A+YQKYVD ASKKEIKD L+QYDR+LLVAD
Sbjct: 64 AGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVAD 123
Query: 444 PRRCEPKKFGGPG 482
PRRCE KKFGGPG
Sbjct: 124 PRRCESKKFGGPG 136
>BC007977-1|AAH07977.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 205 bits (500), Expect = 2e-52
Identities = 94/133 (70%), Positives = 112/133 (84%)
Frame = +3
Query: 84 RXPIQAVQVFGRKXTATAVAYCKRGXGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKXXF 263
+ P+Q+VQVFGRK TATAVA+CKRG G+++VNGRPL+++EPR LQYKL EP+LLLGK F
Sbjct: 4 KGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERF 63
Query: 264 SMVDXRXXXXXXXXXAQVYAIRQAISKALIAFYQKYVDXASKKEIKDXLVQYDRSLLVAD 443
+ VD R AQ+YAIRQ+ISKAL+A+YQKYVD ASKKEIKD L+QYDR+LLVAD
Sbjct: 64 AGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVAD 123
Query: 444 PRRCEPKKFGGPG 482
PRRCE KKFGGPG
Sbjct: 124 PRRCESKKFGGPG 136
>BC004324-1|AAH04324.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 205 bits (500), Expect = 2e-52
Identities = 94/133 (70%), Positives = 112/133 (84%)
Frame = +3
Query: 84 RXPIQAVQVFGRKXTATAVAYCKRGXGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKXXF 263
+ P+Q+VQVFGRK TATAVA+CKRG G+++VNGRPL+++EPR LQYKL EP+LLLGK F
Sbjct: 4 KGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERF 63
Query: 264 SMVDXRXXXXXXXXXAQVYAIRQAISKALIAFYQKYVDXASKKEIKDXLVQYDRSLLVAD 443
+ VD R AQ+YAIRQ+ISKAL+A+YQKYVD ASKKEIKD L+QYDR+LLVAD
Sbjct: 64 AGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVAD 123
Query: 444 PRRCEPKKFGGPG 482
PRRCE KKFGGPG
Sbjct: 124 PRRCESKKFGGPG 136
>AB061841-1|BAB79479.1| 146|Homo sapiens ribosomal protein S16
protein.
Length = 146
Score = 205 bits (500), Expect = 2e-52
Identities = 94/133 (70%), Positives = 112/133 (84%)
Frame = +3
Query: 84 RXPIQAVQVFGRKXTATAVAYCKRGXGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKXXF 263
+ P+Q+VQVFGRK TATAVA+CKRG G+++VNGRPL+++EPR LQYKL EP+LLLGK F
Sbjct: 4 KGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERF 63
Query: 264 SMVDXRXXXXXXXXXAQVYAIRQAISKALIAFYQKYVDXASKKEIKDXLVQYDRSLLVAD 443
+ VD R AQ+YAIRQ+ISKAL+A+YQKYVD ASKKEIKD L+QYDR+LLVAD
Sbjct: 64 AGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVAD 123
Query: 444 PRRCEPKKFGGPG 482
PRRCE KKFGGPG
Sbjct: 124 PRRCESKKFGGPG 136
>BC071674-1|AAH71674.1| 152|Homo sapiens RPS16 protein protein.
Length = 152
Score = 107 bits (258), Expect = 4e-23
Identities = 49/85 (57%), Positives = 63/85 (74%)
Frame = +3
Query: 84 RXPIQAVQVFGRKXTATAVAYCKRGXGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKXXF 263
+ P+Q+VQVFGRK TATAVA+CKRG G+++VNGRPL+++EPR LQYKL EP+LLLGK F
Sbjct: 4 KGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERF 63
Query: 264 SMVDXRXXXXXXXXXAQVYAIRQAI 338
+ VD R AQ+Y Q +
Sbjct: 64 AGVDIRVRVKGGGHVAQIYGESQEL 88
>AK097937-1|BAC85106.1| 178|Homo sapiens protein ( Homo sapiens
cDNA FLJ40618 fis, clone THYMU2013089, moderately
similar to 40S RIBOSOMAL PROTEIN S16. ).
Length = 178
Score = 84.2 bits (199), Expect = 5e-16
Identities = 47/108 (43%), Positives = 63/108 (58%)
Frame = +3
Query: 93 IQAVQVFGRKXTATAVAYCKRGXGMLRVNGRPLDLVEPRLLQYKLQEPILLLGKXXFSMV 272
+Q+VQ+F K A AV C+ G G +R+N PL+++ LQYKL E LLL K + +
Sbjct: 18 LQSVQIFTYKEMAIAVVLCRCGSGFIRMNEGPLEMIRLLTLQYKLLELGLLLDKEQLAGM 77
Query: 273 DXRXXXXXXXXXAQVYAIRQAISKALIAFYQKYVDXASKKEIKDXLVQ 416
D Q+YA+ Q ISKAL+ Y KYVD AS +EIKD L +
Sbjct: 78 DIHVRVKGSGHVVQIYAVLQYISKALVPCYPKYVDEAS-EEIKDTLTR 124
>X98001-1|CAA66638.1| 331|Homo sapiens geranylgeranyl transferase
II protein.
Length = 331
Score = 30.7 bits (66), Expect = 7.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 263 LHGRXQSDXXGWWSCSXSLRYPTSYFKGSDRLLPEIC 373
LH + SD GWW C L P+ G LP++C
Sbjct: 207 LH-QVNSDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240
>U49245-1|AAA91473.1| 331|Homo sapiens geranylgeranyl transferase
type II beta-subunit protein.
Length = 331
Score = 30.7 bits (66), Expect = 7.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 263 LHGRXQSDXXGWWSCSXSLRYPTSYFKGSDRLLPEIC 373
LH + SD GWW C L P+ G LP++C
Sbjct: 207 LH-QVNSDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240
>CR456941-1|CAG33222.1| 331|Homo sapiens RABGGTB protein.
Length = 331
Score = 30.7 bits (66), Expect = 7.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 263 LHGRXQSDXXGWWSCSXSLRYPTSYFKGSDRLLPEIC 373
LH + SD GWW C L P+ G LP++C
Sbjct: 207 LH-QVNSDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240
>BC020790-1|AAH20790.1| 331|Homo sapiens Rab
geranylgeranyltransferase, beta subunit protein.
Length = 331
Score = 30.7 bits (66), Expect = 7.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 263 LHGRXQSDXXGWWSCSXSLRYPTSYFKGSDRLLPEIC 373
LH + SD GWW C L P+ G LP++C
Sbjct: 207 LH-QVNSDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240
>AL357314-5|CAI22393.1| 331|Homo sapiens Rab
geranylgeranyltransferase, beta subunit protein.
Length = 331
Score = 30.7 bits (66), Expect = 7.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 263 LHGRXQSDXXGWWSCSXSLRYPTSYFKGSDRLLPEIC 373
LH + SD GWW C L P+ G LP++C
Sbjct: 207 LH-QVNSDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240
>AB209023-1|BAD92260.1| 320|Homo sapiens Rab
geranylgeranyltransferase, beta subunit variant protein.
Length = 320
Score = 30.7 bits (66), Expect = 7.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +2
Query: 263 LHGRXQSDXXGWWSCSXSLRYPTSYFKGSDRLLPEIC 373
LH + SD GWW C L P+ G LP++C
Sbjct: 207 LH-QVNSDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240
>Y08201-1|CAA69383.1| 331|Homo sapiens rab geranylgeranyl
transferase protein.
Length = 331
Score = 30.3 bits (65), Expect = 9.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 281 SDXXGWWSCSXSLRYPTSYFKGSDRLLPEIC 373
SD GWW C L P+ G LP++C
Sbjct: 212 SDLLGWWLCERQL--PSGGLNGRPEKLPDVC 240
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,209,699
Number of Sequences: 237096
Number of extensions: 1688029
Number of successful extensions: 3178
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3177
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10872716010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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