Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_H06
         (911 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.41 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   0.72 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   2.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   8.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 26.2 bits (55), Expect = 0.41
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +1

Query: 772 PPXXPPPPPPPXXXPP 819
           PP   PPPPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 433 PPXXXPXPPPP 401
           PP   P PPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 766 PXPPXXPPPPP 798
           P  P  PPPPP
Sbjct: 338 PPKPAPPPPPP 348


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.4 bits (53), Expect = 0.72
 Identities = 12/39 (30%), Positives = 14/39 (35%)
 Frame = +2

Query: 557 NGAPGXXXGXXTTTPXTGXKXPPPPPGXXPPNXPPPXXP 673
           +GAPG       +        PP P    PP  PP   P
Sbjct: 18  SGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 12/36 (33%), Positives = 14/36 (38%)
 Frame = +2

Query: 599 PXTGXKXPPPPPGXXPPNXPPPXXPXPXRXXPPPXG 706
           P +G   P P P   P        P P +  PPP G
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQ-GPPPGG 50



 Score = 23.4 bits (48), Expect = 2.9
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +1

Query: 754 QTXXPXPPXXPPPPPPPXXXPPXPXP 831
           Q   P  P   PPP  P   PP   P
Sbjct: 35  QRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +1

Query: 793 PPPPXXXPPXPXPPXTXP 846
           PP P   PP   PP   P
Sbjct: 39  PPNPSQGPPPGGPPGAPP 56


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 784  PPPPPPP 804
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 784  PPPPPPP 804
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -2

Query: 451  GXXKXXPPXXXPXPPPPP 398
            G  +  P    P PPPPP
Sbjct: 1846 GSARNIPVSGSPEPPPPP 1863



 Score = 23.0 bits (47), Expect = 3.9
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +2

Query: 581  GXXTTTPXTGXKXPPPPP 634
            G     P +G   PPPPP
Sbjct: 1846 GSARNIPVSGSPEPPPPP 1863


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = -3

Query: 672 GXXGGGXFGGXXPGGGGGXFXPVXGV 595
           G  GG    G   GGGGG      G+
Sbjct: 33  GASGGSIVVGANNGGGGGGLGIASGL 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.309    0.150    0.529 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,573
Number of Sequences: 438
Number of extensions: 7596
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)