Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_H05
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...   113   4e-26
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...   100   2e-22
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    27   3.5  

>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score =  113 bits (271), Expect = 4e-26
 Identities = 52/117 (44%), Positives = 67/117 (57%)
 Frame = +2

Query: 497 LSGTGGLRVGAEFLNKHLKYDTFYYSTPTWENHHLVFVNSGFTKPRSYRYWDAKTRGIDF 676
           +SGTG L + A FL       T Y S PTW NH  VF  +G T  +SY+Y+D  TRG+D 
Sbjct: 138 ISGTGALCIAANFLASFYPSKTIYVSDPTWGNHKNVFSRAGLTV-KSYKYYDPATRGLDI 196

Query: 677 DGFIEXLKSAPENAVILLHACAHNPXXIDPTRXXWVXIXDVMEXRXLXPFFDSXYXG 847
            G +  L SAP+ ++ILLHACAHNP  +DPT+  W  I   M+ +      D  Y G
Sbjct: 197 KGMLSDLTSAPDGSIILLHACAHNPTGVDPTKAQWDDILKTMQKKNHFALLDMAYQG 253



 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 25/67 (37%), Positives = 38/67 (56%)
 Frame = +1

Query: 217 PRXEVFLLNRLFTEXTFQNKVNLGVGAYRXENGKPWVLPIVRKMEKQLAADETLLHEYLP 396
           P   +F +   + +     K+NLG G YR + GKP+VLP VR+ E +L + + L  EY P
Sbjct: 47  PPDPIFGITEAYKKDGDVKKMNLGAGTYRDDAGKPYVLPSVRQAETELLS-QKLDKEYAP 105

Query: 397 VLGLEXF 417
           + G+  F
Sbjct: 106 ITGIPSF 112


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score =  100 bits (240), Expect = 2e-22
 Identities = 50/120 (41%), Positives = 65/120 (54%), Gaps = 3/120 (2%)
 Frame = +2

Query: 497 LSGTGGLRVGAEFLNKHLKYDT---FYYSTPTWENHHLVFVNSGFTKPRSYRYWDAKTRG 667
           +SGTG   + A F+       T    Y S PTW  H  ++   G T   +Y YWDAK R 
Sbjct: 106 VSGTGANFLAASFIETFYVKHTGAHVYISNPTWPVHRTLWEKLGVTVD-TYPYWDAKNRS 164

Query: 668 IDFDGFIEXLKSAPENAVILLHACAHNPXXIDPTRXXWVXIXDVMEXRXLXPFFDSXYXG 847
            D++G +  +KSAPE ++ LLHACAHNP  IDPTR  W+ I + +  R     FD  Y G
Sbjct: 165 FDYEGMLSTIKSAPEGSIFLLHACAHNPTGIDPTREQWLSIFESLLSRKHLVVFDIAYQG 224



 Score = 68.9 bits (161), Expect = 9e-13
 Identities = 31/77 (40%), Positives = 44/77 (57%)
 Frame = +1

Query: 211 KAPRXEVFLLNRLFTEXTFQNKVNLGVGAYRXENGKPWVLPIVRKMEKQLAADETLLHEY 390
           +A    +F LN  + +     KVN+ VGAYR + GKPW+LP V+K  K +    +  HEY
Sbjct: 11  EAKADAIFKLNAQYHQDEDPKKVNMSVGAYRDDTGKPWILPAVKKASKIVEEQASFNHEY 70

Query: 391 LPVLGLEXFCNASVAML 441
           LP+ GL  F  A+  +L
Sbjct: 71  LPIAGLPRFTKAAAEVL 87


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 322 WVLPIVRKMEKQLAADETLLHEYLPVLGLEXFCNASVAML 441
           W   +VR + K+L   + L HEY P   ++     S+A L
Sbjct: 106 WSQQVVRVLVKRLNISDLLYHEYKPKFEVDTLNATSLASL 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,387
Number of Sequences: 5004
Number of extensions: 54945
Number of successful extensions: 138
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)