Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_H05
         (880 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0786 - 31992357-31992441,31992632-31992752,31993371-319934...   149   4e-36
06_03_0398 - 20379748-20379820,20379930-20380024,20380127-203802...   107   2e-23
02_02_0198 + 7705868-7706065,7706955-7707052,7707269-7707374,770...   106   3e-23
06_03_1354 - 29520376-29520582,29520668-29520795,29521015-295210...    28   8.6  

>01_06_0786 -
           31992357-31992441,31992632-31992752,31993371-31993465,
           31993595-31993716,31994217-31994354,31994564-31994727,
           31994835-31994955,31995049-31995148,31995329-31995412,
           31996082-31996143,31996246-31996317,31996447-31996506
          Length = 407

 Score =  149 bits (360), Expect = 4e-36
 Identities = 71/134 (52%), Positives = 82/134 (61%)
 Frame = +2

Query: 446 GEXSPAIAAGKAFGVXVLSGTGGLRVGAEFLNKHLKYDTFYYSTPTWENHHLVFVNSGFT 625
           G  SPAI   +   V  LSGTG LRVG EFL +H    T Y   PTW NH  VF  +G T
Sbjct: 90  GADSPAIQENRVATVQCLSGTGSLRVGGEFLARHYHERTIYIPQPTWGNHPKVFTLAGLT 149

Query: 626 KPRSYRYWDAKTRGIDFDGFIEXLKSAPENAVILLHACAHNPXXIDPTRXXWVXIXDVME 805
             RSYRY+D  TRG+DF G +E L SAP  A++LLHACAHNP  +DPT   W  I  +M 
Sbjct: 150 V-RSYRYYDPATRGLDFQGLLEDLGSAPSGAIVLLHACAHNPTGVDPTLDQWEQIRQLMR 208

Query: 806 XRXLXPFFDSXYXG 847
            + L PFFDS Y G
Sbjct: 209 SKALLPFFDSAYQG 222



 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 31/79 (39%), Positives = 45/79 (56%)
 Frame = +1

Query: 211 KAPRXEVFLLNRLFTEXTFQNKVNLGVGAYRXENGKPWVLPIVRKMEKQLAADETLLHEY 390
           +AP   +  +   + +     KVNLGVGAYR E GKP VL +VR+ E+ L  + + + EY
Sbjct: 12  QAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQMLINNPSRVKEY 71

Query: 391 LPVLGLEXFCNASVAMLLG 447
           LP+ GL  F   S  ++ G
Sbjct: 72  LPITGLADFNKLSAKLIFG 90


>06_03_0398 -
           20379748-20379820,20379930-20380024,20380127-20380222,
           20380342-20380501,20380844-20381016,20381102-20381206,
           20381460-20381565,20381741-20381947,20383478-20383563,
           20383655-20383846
          Length = 430

 Score =  107 bits (256), Expect = 2e-23
 Identities = 49/134 (36%), Positives = 75/134 (55%)
 Frame = +2

Query: 446 GEXSPAIAAGKAFGVXVLSGTGGLRVGAEFLNKHLKYDTFYYSTPTWENHHLVFVNSGFT 625
           GE    I   +   V  LSGTG  R+ A+F  + L     Y  TPTW NHH ++ ++   
Sbjct: 114 GENCEFIKDKRIAAVQALSGTGACRLFADFQKRFLPDSQIYIPTPTWANHHNIWRDAQVP 173

Query: 626 KPRSYRYWDAKTRGIDFDGFIEXLKSAPENAVILLHACAHNPXXIDPTRXXWVXIXDVME 805
           + +++ Y+  ++RG+DF G ++ +K+AP+ +  LLHACAHNP  +DP+   W  I    +
Sbjct: 174 Q-KTFTYYHPESRGLDFAGLMDDIKNAPDGSFFLLHACAHNPTGVDPSEEQWREISHQFK 232

Query: 806 XRXLXPFFDSXYXG 847
            +   PFFD  Y G
Sbjct: 233 VKKHFPFFDMAYQG 246



 Score = 48.8 bits (111), Expect = 6e-06
 Identities = 27/78 (34%), Positives = 42/78 (53%)
 Frame = +1

Query: 214 APRXEVFLLNRLFTEXTFQNKVNLGVGAYRXENGKPWVLPIVRKMEKQLAADETLLHEYL 393
           A +  +  +   F      +KVN+GVGAYR ++GKP VL  VR+ E+++A    +  EYL
Sbjct: 39  AAKDPILGVTEAFLADPSPDKVNVGVGAYRDDSGKPVVLECVREAERRIAGSMNM--EYL 96

Query: 394 PVLGLEXFCNASVAMLLG 447
           P+ G       S+ +  G
Sbjct: 97  PMGGSIKMIEESLKLAYG 114


>02_02_0198 +
           7705868-7706065,7706955-7707052,7707269-7707374,
           7707636-7707740,7707823-7707995,7708435-7708594,
           7708683-7708778,7709349-7709417,7709434-7709528,
           7709615-7709687
          Length = 390

 Score =  106 bits (254), Expect = 3e-23
 Identities = 47/117 (40%), Positives = 69/117 (58%)
 Frame = +2

Query: 497 LSGTGGLRVGAEFLNKHLKYDTFYYSTPTWENHHLVFVNSGFTKPRSYRYWDAKTRGIDF 676
           LSGTG  R+ A+F  + L     Y  TPTW NHH ++ ++   + R++ Y+  ++RG+DF
Sbjct: 68  LSGTGACRLFADFQRRFLPNSQIYIPTPTWSNHHNIWRDAQVPQ-RTFTYYHPESRGLDF 126

Query: 677 DGFIEXLKSAPENAVILLHACAHNPXXIDPTRXXWVXIXDVMEXRXLXPFFDSXYXG 847
            G ++ +K+AP  +  LLHACAHNP  +DPT   W  I    + +   PFFD  Y G
Sbjct: 127 AGLMDDIKNAPNGSFFLLHACAHNPTGVDPTEEQWREISYQFKIKNHFPFFDMAYQG 183


>06_03_1354 -
           29520376-29520582,29520668-29520795,29521015-29521099,
           29521169-29521522
          Length = 257

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -3

Query: 464 WQDXPHPRSIATDALQNXSRPNTGRYSCSKVSSAASCFSILRTMGSTHGLPFSXL 300
           W+  P P ++A+ A  +   P T     ++ ++AAS     R  G  HGL    L
Sbjct: 29  WRPRPRPATVASTAAMSVRGPGT-----TQAAAAASAVHSERHRGGVHGLQLPPL 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,444,971
Number of Sequences: 37544
Number of extensions: 396665
Number of successful extensions: 990
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)