Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_H05
         (880 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   2.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   2.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   4.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   8.6  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 410 SRPNTGRYSCSKV 372
           S+ NTG YSC KV
Sbjct: 221 SKTNTGEYSCLKV 233


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 410 SRPNTGRYSCSKV 372
           S+ NTG YSC KV
Sbjct: 221 SKTNTGEYSCLKV 233


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +2

Query: 590 NHHLVFVNSGFTKPR-SYRYWDAK--TRGIDFDGFI 688
           NHH +  +SGF   R   RY+  +     +DFD F+
Sbjct: 285 NHHAILGHSGFLCERHQKRYFFGRDSVDHVDFDEFL 320


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = +2

Query: 326 YCPSFVRWKN 355
           YCP +++W N
Sbjct: 473 YCPRYIKWTN 482


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 438 APWVRXVLPSPLEKLLV 488
           APWVR V    L +LLV
Sbjct: 338 APWVRRVFIHVLPRLLV 354


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 438 APWVRXVLPSPLEKLLV 488
           APWVR +    L KLL+
Sbjct: 333 APWVRKIFIRRLPKLLL 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,665
Number of Sequences: 438
Number of extensions: 4066
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)