Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_H04
         (929 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.060
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    26   0.56 

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.1 bits (62), Expect = 0.060
 Identities = 13/37 (35%), Positives = 14/37 (37%)
 Frame = +1

Query: 583 PXPXPTPPXPSPXXPNXPPXPPPPXXXPXLPTPQXXS 693
           P P  +P  P    P  P   PPP   P  P  Q  S
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPS 61



 Score = 27.9 bits (59), Expect = 0.14
 Identities = 15/45 (33%), Positives = 17/45 (37%)
 Frame = +3

Query: 603 PXPLTPXPQXSPTXPPPXXXPXSPHSPXXLPPPXPDXPSXPXLPP 737
           P    P PQ SP   P      SP +P   PPP     + P   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 26.6 bits (56), Expect = 0.32
 Identities = 15/41 (36%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
 Frame = +3

Query: 627 QXSPTXPPPXXXPX-SPHSPXXLPPPXPDXPSXPXLPPPTP 746
           Q S   P P   P  SP +P    PP P     P  PP  P
Sbjct: 15  QPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 25.8 bits (54), Expect = 0.56
 Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
 Frame = +1

Query: 580 PPXPXPTPPXPS-PXXPNXPPXPPPPXXXPXLPT-PQXXSP 696
           P    P PP P+       PP P  P   P +PT P    P
Sbjct: 411 PSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMPSMAGP 451


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.8 bits (54), Expect = 0.56
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 580 PPXPXPTPPXPSPXXPN 630
           PP P P PP PS   P+
Sbjct: 338 PPKPAPPPPPPSSSGPD 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,509
Number of Sequences: 438
Number of extensions: 7333
Number of successful extensions: 49
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30355689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)