Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_H01
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047...    30   2.0  
08_02_1455 + 27230134-27231110,27231195-27231327,27231417-272315...    29   3.5  

>07_03_1530 + 27502546-27502671,27503487-27503561,27504670-27504746,
            27505576-27507522,27508478-27508946,27509898-27510079,
            27510746-27511208,27511295-27511691,27511810-27511937,
            27512106-27512273,27512452-27512559,27512830-27512838
          Length = 1382

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +2

Query: 248  PSLPPKXNKAPLPQIPQSYTVKSACEPSYSSR 343
            P  PP  N+ P P  PQ  T    C PSY  R
Sbjct: 1211 PPHPPFPNQYPYPPEPQQNTQPWNCNPSYPER 1242


>08_02_1455 +
           27230134-27231110,27231195-27231327,27231417-27231501,
           27233372-27233571
          Length = 464

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/66 (27%), Positives = 28/66 (42%)
 Frame = +2

Query: 146 PPMNPLDKXLAXLRIYANALXAKLQAXINPAKXXPSLPPKXNKAPLPQIPQSYTVKSACE 325
           PP+ P       L   A A  A     ++P+   P+ P     +P PQIP S +  +A  
Sbjct: 21  PPVVPRSPTPLDLSSAAAAAAAASYRRLSPSLRPPAHPQARLPSPYPQIPSSSSAAAAGS 80

Query: 326 PSYSSR 343
             + +R
Sbjct: 81  SGHHAR 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,992,957
Number of Sequences: 37544
Number of extensions: 277444
Number of successful extensions: 534
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)