Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_G21
         (962 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       31   0.012
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   9.5  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 31.5 bits (68), Expect = 0.012
 Identities = 16/49 (32%), Positives = 20/49 (40%)
 Frame = +2

Query: 581 QXPLXGGXPSXPXPRXPPXAXXXATPPSHAGXPPXRAXXPPXSPPXLXP 727
           Q P  G     P P   P A    +PP+ +  PP     PP +PP   P
Sbjct: 14  QQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPP--PGGPPGAPPSQNP 60



 Score = 25.8 bits (54), Expect = 0.58
 Identities = 15/48 (31%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
 Frame = +1

Query: 748 PXXXHSXXAPPRXPPXPSXXPLPPPPXPQXLXPP-PXXXPXPPXXPXA 888
           P        P    P P   P   P  PQ   PP P   P P   P A
Sbjct: 7   PIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGA 54


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 9.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 284  HYXQRCILRGPSPRPTXLQA 343
            H    C+LR  +P P  L+A
Sbjct: 1101 HRDLPCVLRASTPAPVVLEA 1120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,307
Number of Sequences: 438
Number of extensions: 4114
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31686018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)