Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_G19
         (847 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0218 + 18219956-18220555                                         31   1.5  
12_02_0692 - 22197582-22198214,22198761-22198935,22199089-221991...    30   2.0  
09_02_0057 - 3697255-3698116,3698191-3698351,3698442-3698636,369...    29   4.7  
05_06_0131 - 25888434-25888931,25889105-25889155,25889249-258893...    29   4.7  
12_02_1174 - 26696869-26698191                                         29   6.2  
02_01_0483 - 3467813-3467873,3468072-3468154,3468505-3468579,346...    29   6.2  
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704...    28   8.1  

>06_03_0218 + 18219956-18220555
          Length = 199

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -1

Query: 232 KGERRTGSREAAGXEQESARGSXPGGNAGELERPGGXXHRXLERXXXGGADRGAE 68
           +G RR GS      ++ ++RG   GG+AG  +   G       +   GG  RG E
Sbjct: 121 EGRRRGGSSGGLRGKRRASRGGGGGGDAGGGDGAAGRRTVEAAQAAGGGRQRGRE 175


>12_02_0692 -
           22197582-22198214,22198761-22198935,22199089-22199185,
           22199359-22199473,22199546-22199633,22199972-22200063,
           22200138-22200629,22201025-22201048,22201348-22203489
          Length = 1285

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +3

Query: 144 SPAFPPGXLPRALSCSXPAASRLPVRLSPFGXR 242
           SPA  P  LPRAL+    AA RLP+   P   R
Sbjct: 182 SPAAAPSLLPRALALLADAAGRLPLGEHPDARR 214


>09_02_0057 -
           3697255-3698116,3698191-3698351,3698442-3698636,
           3698728-3699126,3699208-3699477,3700102-3700695
          Length = 826

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 17/54 (31%), Positives = 21/54 (38%)
 Frame = -1

Query: 298 SERPTPN*XTYSXSYEKAPRXPKGERRTGSREAAGXEQESARGSXPGGNAGELE 137
           SE P P       S  +APR     R +  REA        +G   GGN  + E
Sbjct: 82  SESPPPPAAKRERSSSRAPRDSVERRDSADREAPPPSSRKRKGHEGGGNESDPE 135


>05_06_0131 -
           25888434-25888931,25889105-25889155,25889249-25889331,
           25889733-25889826,25890188-25890310,25890909-25891154
          Length = 364

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -1

Query: 214 GSREAAGXEQESARGSXPGGNAGEL 140
           GS EA   E+E ARG   GG  GE+
Sbjct: 12  GSEEAEEDEREEARGGGGGGGGGEV 36


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = +3

Query: 75  PLSAPPXXXRSSXR-WXXPPGLSSSPAFPPGXLPRALSCSXPAASRLP 215
           P S PP   + S R W  PP ++  PA P    P   S S P+    P
Sbjct: 298 PPSPPPPPQQPSQRYWTPPPAITPEPAKPAAGKP--TSSSPPSTKDSP 343


>02_01_0483 -
           3467813-3467873,3468072-3468154,3468505-3468579,
           3468728-3468782,3470595-3470950
          Length = 209

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 232 KGERRTGSREAAGXEQESARGSXPGGNAGELERPGGXXHR 113
           KGERR G  ++   E+E+ARG   G  +G+     G   R
Sbjct: 54  KGERRGGEWKSETYEEEAARGEGSGVLSGQTNEIVGEKKR 93


>12_02_0118 -
           13869237-13869307,13869375-13869465,13870321-13870440,
           13870668-13870795,13871159-13871270,13871719-13871817,
           13871918-13871992,13872099-13872320,13873177-13874034
          Length = 591

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
 Frame = +3

Query: 63  FGSAPLSAPPXXXRSSXRWXXPPGLSSSPAFPPGXLPRALSCSXPAASRLPVRLS---PF 233
           FG  P  APP   + +  +  PP   S    P G  P A++   P     PV  +   PF
Sbjct: 120 FGGPPSGAPPAQAQRTP-FGGPPSAMSQGPLPFGGPPAAVASQPPPFGGPPVAAAQPPPF 178

Query: 234 G 236
           G
Sbjct: 179 G 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,090,555
Number of Sequences: 37544
Number of extensions: 242565
Number of successful extensions: 862
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)