Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_G19
         (847 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40945-6|AAS80346.1|  437|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U40945-5|AAS80344.1|  617|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U97196-8|AAB52457.3|  191|Caenorhabditis elegans Hypothetical pr...    28   9.6  
U12966-6|AAM48533.1|  783|Caenorhabditis elegans Hypothetical pr...    28   9.6  

>U40945-6|AAS80346.1|  437|Caenorhabditis elegans Hypothetical
           protein F10D7.5c protein.
          Length = 437

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 147 PAFPPGXLPRALSCSXPAASRLPVRLSP 230
           P+ PP   PRA+  S  + SRLP R SP
Sbjct: 321 PSTPPPVAPRAVLGSSSSTSRLPNRSSP 348


>U40945-5|AAS80344.1|  617|Caenorhabditis elegans Hypothetical
           protein F10D7.5a protein.
          Length = 617

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 147 PAFPPGXLPRALSCSXPAASRLPVRLSP 230
           P+ PP   PRA+  S  + SRLP R SP
Sbjct: 501 PSTPPPVAPRAVLGSSSSTSRLPNRSSP 528


>U97196-8|AAB52457.3|  191|Caenorhabditis elegans Hypothetical
           protein B0207.2 protein.
          Length = 191

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/60 (28%), Positives = 23/60 (38%)
 Frame = +2

Query: 266 VGXSVRCRSFAPSWAVCTNPPXQPDRCALSGNYRLESNPVXHDLSPLAAATGNRISRARY 445
           VG  + C     +   C NP    + C L  +Y  E  PV  D +     TG R    R+
Sbjct: 21  VGTMLACALCIANPGACANPMWYTNFCLLLHDYMQEMYPVHPDGTSSPKMTGLRAQMQRH 80


>U12966-6|AAM48533.1|  783|Caenorhabditis elegans Hypothetical
           protein F54D8.6 protein.
          Length = 783

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -1

Query: 241 RXPKGER--RTGSREAAGXEQESARGSXPGGNAGELERPGGXXHRXLERXXXGGADRGAE 68
           R P G+R  R+  RE  G      R   PG  +  ++RP G   R ++R   GG   G +
Sbjct: 537 RPPGGDRIERSRDREPGGGVPGVDRA--PGRGSRGIDRPPGGDSRGVDRPPGGGGIPGVD 594


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,038,178
Number of Sequences: 27780
Number of extensions: 165754
Number of successful extensions: 418
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)