Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_G17
         (866 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1385 + 26189034-26189294,26189427-26189636,26191016-261910...    55   6e-08
09_04_0359 + 16941904-16942110,16943636-16943785,16944084-169442...    55   8e-08
03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312     53   3e-07
04_01_0500 - 6540769-6541482,6541819-6541877,6541965-6542064,654...    28   8.4  

>07_03_1385 +
           26189034-26189294,26189427-26189636,26191016-26191092,
           26191196-26191340
          Length = 230

 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 27/106 (25%), Positives = 54/106 (50%)
 Frame = +3

Query: 360 GXXSFTSSTPGEXVICXYSNSXSWFXGSXLXVXLDIQVGXXAVDYANVAXKEKLTELQLR 539
           G  +FT++  G+ + C ++          +    D + G  A D++NVA K ++  +++ 
Sbjct: 105 GNFAFTATEAGDYLACFWAPDHK--PPVSIGFEFDWRSGVAAKDWSNVAKKGQVDVMEME 162

Query: 540 IRXLLDQVHXITKEQAYQRQREERFRQTSESTNQRVLWWSLLQTGV 677
           ++ L + +  I +E  Y R+REE  +  ++ TN R+ W   L  G+
Sbjct: 163 LKKLEETIKSIHEEMFYLREREEEMQNLNKQTNSRMAWLGFLSLGI 208


>09_04_0359 +
           16941904-16942110,16943636-16943785,16944084-16944293,
           16944376-16944452,16944554-16944698
          Length = 262

 Score = 54.8 bits (126), Expect = 8e-08
 Identities = 36/124 (29%), Positives = 57/124 (45%)
 Frame = +3

Query: 294 GXHVEVRDPNXXILLSRVYSLEGXXSFTSSTPGEXVICXYSNSXSWFXGSXLXVXLDIQV 473
           G   +V  P   I+  +     G  SFT++  G  + C  ++  +      + + LD +V
Sbjct: 115 GTPAKVTSPFGDIVHHKQKVSTGQFSFTTAEAGNYLACFSADGRN--KRLVVKLNLDWRV 172

Query: 474 GXXAVDYANVAXKEKLTELQLRIRXLLDQVHXITKEQAYQRQREERFRQTSESTNQRVLW 653
           G    D+ +VA KEKL  ++L +  L   V  I +     R +E   R TSE TN R  W
Sbjct: 173 GIATKDWDSVAKKEKLEGVELELVKLETSVQAIHENLLLLRSKEANMRDTSEKTNARATW 232

Query: 654 WSLL 665
            S++
Sbjct: 233 LSII 236


>03_03_0128 - 14677152-14677296,14677381-14677457,14679836-14680312
          Length = 232

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 27/98 (27%), Positives = 51/98 (52%)
 Frame = +3

Query: 360 GXXSFTSSTPGEXVICXYSNSXSWFXGSXLXVXLDIQVGXXAVDYANVAXKEKLTELQLR 539
           G  +FT+S  G+ + C ++        + +    D + G  A D+ NVA K ++  +++ 
Sbjct: 107 GNFAFTASEAGDYLACFWAPDHR--PTATVGFEFDWRSGVSARDWTNVAKKGQVDMMEVE 164

Query: 540 IRXLLDQVHXITKEQAYQRQREERFRQTSESTNQRVLW 653
           ++ L D ++ I +E  Y R REE  ++ +  TN R+ W
Sbjct: 165 LKKLEDTINSIHEEMFYLRAREEEMQELNRRTNSRMAW 202


>04_01_0500 -
           6540769-6541482,6541819-6541877,6541965-6542064,
           6542113-6542322,6542507-6542765,6544022-6544215
          Length = 511

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +3

Query: 561 VHXITKEQAYQRQREERFRQTSESTNQRVLWWSLLQTGVL 680
           +H   ++Q  Q+Q+++RF    +  N  VLW S++ TGVL
Sbjct: 258 LHEQQQQQQQQQQQQQRFLIAVQ--NVLVLWDSVILTGVL 295


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,651,322
Number of Sequences: 37544
Number of extensions: 190684
Number of successful extensions: 346
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)