Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_G12
         (1125 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    33   0.096
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.39 

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 32.7 bits (71), Expect = 0.096
 Identities = 21/78 (26%), Positives = 24/78 (30%)
 Frame = +3

Query: 558 PASPLXQXRPPXXXPSFPXHPPXSLXXXHPTXWXLPXHXHPSPPNIAXLXLSHXPAXXPX 737
           P +P  + RPP   P  P  PP S     P     P      PP          P   P 
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPS 189

Query: 738 SSXXXPPXHSXXTPPXIS 791
                PP      PP +S
Sbjct: 190 LPSAVPPMPPKVPPPPLS 207



 Score = 29.9 bits (64), Expect = 0.68
 Identities = 24/81 (29%), Positives = 28/81 (34%), Gaps = 4/81 (4%)
 Frame = +3

Query: 528 PPLPXXST*XPAS--PLXQXRPPXXXPSFPXHPPXSLXXXHPTXWXLPXHXHPSPPNIAX 701
           PP P      PAS  P+    PP      P   P +     P+   LP    P PP +  
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPP 203

Query: 702 LXLSHXPAXXPXS--SXXXPP 758
             LS  P     S  S   PP
Sbjct: 204 PPLSQAPVANTSSRPSSFAPP 224


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.39
 Identities = 20/55 (36%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
 Frame = +3

Query: 528 PPLPXXS-T*XPASPLXQXRPPXXXPSFPXHPPXSLXXXHPTXWXLPXHXHPSPP 689
           PPL   S T  P  P     PP   PS P   P SL    P    LP     +PP
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,261,341
Number of Sequences: 5004
Number of extensions: 27208
Number of successful extensions: 81
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 597654600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)