Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_G12
         (1125 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    34   0.16 
Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    31   1.1  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    29   6.0  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    29   6.0  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    29   6.0  

>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 34.3 bits (75), Expect = 0.16
 Identities = 25/75 (33%), Positives = 26/75 (34%), Gaps = 3/75 (4%)
 Frame = +1

Query: 607 SPLTPPPPXXXXTPPXGAXXXXXXXXXXXXXXYXF-RTPPLXXPTXAPXXPPXTXXPXP- 780
           SP  PPPP    TPP  +                  RTPP   P   P  PP    P P 
Sbjct: 137 SPPPPPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPPP 196

Query: 781 -LXSPXXRXLAXXRP 822
            L S   R L   RP
Sbjct: 197 RLNSHDRRALRARRP 211


>Z54238-1|CAA90992.2|  281|Caenorhabditis elegans Hypothetical protein
            T28C6.1 protein.
          Length = 281

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 19/67 (28%), Positives = 25/67 (37%)
 Frame = -2

Query: 1109 GGXGGRXXRGGEXXGGXXNGRXXTRXVGLSGVWXGGXRFXWEGKTXXRXGXGXXSVXXEX 930
            G  GG+   GG    G   G   ++  G  G W GG     +G      G    +   E 
Sbjct: 150  GSQGGQNGGGGRGGSGGQGGWGGSQDGGSQGGW-GGQNGGGQGGNQGGGGGRGGNQGGEQ 208

Query: 929  XGWGVRG 909
             GWG +G
Sbjct: 209  GGWGGQG 215


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 20/76 (26%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
 Frame = +3

Query: 558 PASPLXQXRPPXXXPSFPXHPPXSLXXXHPTXWXLPXHXHPSP-PNIAXLXLSHXPAXXP 734
           P +P  Q   P   P    +P  ++    P     P H  P+P P  A       PA  P
Sbjct: 68  PPAPYPQHAVPAPAPPLASYPQNAVPVPAPPPAPYPQHAVPAPAPPPAPYPQHAVPAPAP 127

Query: 735 XSSXXXPPXHSXXTPP 782
                 PP      PP
Sbjct: 128 YQQQPPPPPPPPHYPP 143


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 25/87 (28%), Positives = 27/87 (31%), Gaps = 1/87 (1%)
 Frame = +1

Query: 535 SPAXXPDXLHPXXPXXGXHXXX-LXSPLTPPPPXXXXTPPXGAXXXXXXXXXXXXXXYXF 711
           SP   P    P  P  G        SP  PPPP    +PP G+                 
Sbjct: 271 SPPPPPTGSPPPPPAGGSPPPPRAGSP--PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGS 328

Query: 712 RTPPLXXPTXAPXXPPXTXXPXPLXSP 792
             PP      AP   P T  P P  SP
Sbjct: 329 PPPPPRQKRQAPERSPPTGSP-PTGSP 354


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 25/87 (28%), Positives = 27/87 (31%), Gaps = 1/87 (1%)
 Frame = +1

Query: 535 SPAXXPDXLHPXXPXXGXHXXX-LXSPLTPPPPXXXXTPPXGAXXXXXXXXXXXXXXYXF 711
           SP   P    P  P  G        SP  PPPP    +PP G+                 
Sbjct: 292 SPPPPPTGSPPPPPAGGSPPPPRAGSP--PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGS 349

Query: 712 RTPPLXXPTXAPXXPPXTXXPXPLXSP 792
             PP      AP   P T  P P  SP
Sbjct: 350 PPPPPRQKRQAPERSPPTGSP-PTGSP 375


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 25/87 (28%), Positives = 27/87 (31%), Gaps = 1/87 (1%)
 Frame = +1

Query: 535 SPAXXPDXLHPXXPXXGXHXXX-LXSPLTPPPPXXXXTPPXGAXXXXXXXXXXXXXXYXF 711
           SP   P    P  P  G        SP  PPPP    +PP G+                 
Sbjct: 277 SPPPPPTGSPPPPPAGGSPPPPRAGSP--PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGS 334

Query: 712 RTPPLXXPTXAPXXPPXTXXPXPLXSP 792
             PP      AP   P T  P P  SP
Sbjct: 335 PPPPPRQKRQAPERSPPTGSP-PTGSP 360


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,385,187
Number of Sequences: 27780
Number of extensions: 190469
Number of successful extensions: 545
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3036427278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)