Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_G10
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    31   0.28 
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    27   3.4  
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos...    27   4.5  

>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
 Frame = +3

Query: 354 LALYVFAXFWGLYLIDEDLILPAHIQEVLPNWINHGMXXTIVP--FIILELLLTNRNYPT 527
           L   V   +W +   D  L++P      LP  +N  +   ++P  + +++ L  +  + +
Sbjct: 29  LETIVSILYWSIVSYDRSLLIPKDRPVPLP--LNFDISVHLMPTVYTLIDYLFFSPPF-S 85

Query: 528 RKVG--LSVTLLINFTYVFWIHYLYXXQGTWVYPFLDLMN 641
             +G  L V L I  +Y+ W+   Y     + YP L +++
Sbjct: 86  LSIGPSLLVYLSIAVSYMLWVEKCYQMNKFYAYPILAILD 125


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 113 KEQLINGTRALLTGCCRCRSETQNL 39
           KE L +GT + L  CC     TQNL
Sbjct: 917 KESLCSGTFSCLLACCNSVLRTQNL 941


>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +2

Query: 386 PVLDRRGPNSAGPHPRGSTXLDKSRDAXXYCTFHHFGASLD 508
           P L  R  +S+   P  ST   KSR A    T H  G S D
Sbjct: 133 PSLPPRTKSSSQSSPMASTSTSKSRYADSLSTLHDMGFSDD 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,781,739
Number of Sequences: 5004
Number of extensions: 52279
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)