Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_G10
         (855 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1552 - 27648193-27648307,27648384-27648431,27649140-276492...    31   0.89 
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329...    29   6.2  
02_01_0241 + 1595188-1595498,1596621-1596654,1596791-1596979,159...    29   6.2  

>07_03_1552 -
           27648193-27648307,27648384-27648431,27649140-27649234,
           27649311-27649376,27649721-27649810,27650210-27650437,
           27650572-27650605,27651106-27651611
          Length = 393

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 15/62 (24%), Positives = 26/62 (41%)
 Frame = +3

Query: 450 INHGMXXTIVPFIILELLLTNRNYPTRKVGLSVTLLINFTYVFWIHYLYXXQGTWVYPFL 629
           I  GM       ++++  L N  +P  ++   V    ++    W+ +       W YPFL
Sbjct: 287 ITDGMHSLNAVLLLIDTFLNNMPFPWYRLAFFVFWSCSYVTFQWVLHACGAISWWPYPFL 346

Query: 630 DL 635
           DL
Sbjct: 347 DL 348


>02_01_0458 +
           3291563-3291733,3292082-3292769,3292847-3293363,
           3293438-3293637,3294137-3294372,3294469-3295302
          Length = 881

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +1

Query: 787 LXPPPXXXPXXPXPXXPPXPXR 852
           L PPP   P  P P  PP P R
Sbjct: 351 LMPPPPPPPPPPPPPPPPPPPR 372


>02_01_0241 +
           1595188-1595498,1596621-1596654,1596791-1596979,
           1597956-1598045,1598136-1598201,1598680-1598892
          Length = 300

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 206 FLTFWCFALQTIYFGTAVLNDIIGTNATAPKN 301
           + T W F L TIYFG      I G +  A +N
Sbjct: 101 YYTQWTFILVTIYFGLGTALSIYGCSKLADEN 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,227,343
Number of Sequences: 37544
Number of extensions: 339930
Number of successful extensions: 1116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)