Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_G09
(984 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.020
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 26 0.11
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.19
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.1
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 4.1
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc... 26 7.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 9.4
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 34.7 bits (76), Expect = 0.020
Identities = 19/61 (31%), Positives = 19/61 (31%)
Frame = +2
Query: 524 KKXXXXPPPPPXXXXXKKKXXXXXXXXXXPPPPPPPXFXXXGGGGXXXXXXXXXXXPPXP 703
KK PPPP K PPPPPPP G PP P
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP--RSNAAGSIPLPPQGRSAPPPPP 365
Query: 704 P 706
P
Sbjct: 366 P 366
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 25.8 bits (54), Expect(2) = 0.11
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3
Query: 603 GXPPPPPPP 629
G PPPPPPP
Sbjct: 304 GLPPPPPPP 312
Score = 25.0 bits (52), Expect(2) = 0.11
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 609 PPPPPPPXXXF 641
PPPPPPP F
Sbjct: 308 PPPPPPPSNDF 318
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.19
Identities = 15/40 (37%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Frame = +3
Query: 543 PXPPPXXXF---XKKKXPPXXXXGXPPPPPPPXXXFXXGG 653
P PPP PP PPPPPPP GG
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 31.5 bits (68), Expect = 0.19
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +3
Query: 543 PXPPPXXXFXKKKXPPXXXXGXPPPPPPPXXXFXXGGG 656
P P P PP G PPPPPP GG
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 23.0 bits (47), Expect(2) = 8.1
Identities = 8/15 (53%), Positives = 8/15 (53%)
Frame = +1
Query: 613 PPPPPPXXXFXXGGG 657
PPPPPP GG
Sbjct: 775 PPPPPPPPPAVSAGG 789
Score = 21.0 bits (42), Expect(2) = 8.1
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = +1
Query: 610 PPPPPP 627
PPPPPP
Sbjct: 732 PPPPPP 737
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.1 bits (57), Expect = 4.1
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +3
Query: 543 PXPPPXXXFXKKKXPPXXXXGXPPPPPPP 629
P PPP F PP PPPPPPP
Sbjct: 10 PPPPPPPGFE----PP----SQPPPPPPP 30
Score = 25.8 bits (54), Expect = 9.4
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3
Query: 603 GXPPPPPPP 629
G PPPPPPP
Sbjct: 7 GNPPPPPPP 15
Score = 25.8 bits (54), Expect = 9.4
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 611 PPPPPPPXF 637
PPPPPPP F
Sbjct: 10 PPPPPPPGF 18
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 27.1 bits (57), Expect = 4.1
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +2
Query: 611 PPPPPPPXFXXXGGG 655
PPPPPPP GG
Sbjct: 946 PPPPPPPPLVSAAGG 960
Score = 26.2 bits (55), Expect = 7.1
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 610 PPPPPPPXXXFXXGGG 657
PPPPPPP GG
Sbjct: 945 PPPPPPPPPLVSAAGG 960
>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 379
Score = 26.2 bits (55), Expect = 7.1
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = -3
Query: 655 PPPXXXKXXGGGGGGGXPXXXXGGXFFFXXXXXGGG 548
PPP + G G GG P GG F G G
Sbjct: 76 PPPPGAEGGPGAGFGGFPGAGPGGARTFHFNMGGPG 111
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 9.4
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 543 PXPPPXXXFXKKKXPPXXXXGXPPPPPPP 629
P PPP PP G P PPPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPA-GPPSAPPPP 1734
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,943,876
Number of Sequences: 5004
Number of extensions: 27452
Number of successful extensions: 286
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 507285244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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