Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_G07
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    58   2e-09
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    29   0.85 
SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA synthase|Sc...    28   2.0  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    27   4.5  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.0  
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||...    26   7.9  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 35/92 (38%), Positives = 51/92 (55%)
 Frame = +2

Query: 395 DKKSYTLYLKELYEKISSKIGREGA*PS*SI*NKHEQSNERHPRAGLRNFSFFTGESMDC 574
           DKKSY  Y+K   + I +++ +E       +  K+     +   A  +++ F+ GESMD 
Sbjct: 80  DKKSYMSYIKGYMKAIKARL-QESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDP 138

Query: 575 DGMVAMMEYRDFDGTQIPIMMFFKHGLEEEKF 670
           D MV +M YR+ DG   P M+FFK GL  EKF
Sbjct: 139 DAMVVLMNYRE-DGI-TPYMIFFKDGLVSEKF 168


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 363 VSGRCQLRARRPSPCPRQPLQPKDXNPRA 277
           VS R   RAR P P  R  +Q K+ +PRA
Sbjct: 830 VSQRSTSRARSPEPTNRNSVQSKNVDPRA 858


>SPAC4F8.14c |hcs1|hcs|3-hydroxy-3-methylglutaryl-CoA
           synthase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 447

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 321 TDSAVERGVDIVLKPQAXRNITPSVTRNPTHC 416
           TD A+E+G+  + K +  + ++PSV   PT+C
Sbjct: 295 TDKALEKGLMAITKERFNKRVSPSVYA-PTNC 325


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 369 PVVSGRCQLRARRPSPCPRQPLQPKDXNPRAGE 271
           PV+S   Q + ++P P   QP  P + +P +GE
Sbjct: 359 PVLSTTTQPKVQKPVPKAFQPKVPMEISPFSGE 391


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -2

Query: 626 VFAYHQSLYIPSWQPC-HHN 570
           V A+ Q L++P W PC  HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355


>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 710

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 18/68 (26%), Positives = 31/68 (45%)
 Frame = +3

Query: 336 ERGVDIVLKPQAXRNITPSVTRNPTHCTSKNYMKKLVAKLEEKAPDQVEVFKTNMNKVMK 515
           ER   + ++ +   + T  ++ NPT  +SK   K      E K P Q   +  N  +  K
Sbjct: 496 ERSSTVTIR-KPIESSTNKISENPTTLSSKVENKNEPKTGENKEPSQTNEY-VNCKQENK 553

Query: 516 DILGQV*G 539
           ++ GQ+ G
Sbjct: 554 ELSGQLSG 561


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,335,811
Number of Sequences: 5004
Number of extensions: 40208
Number of successful extensions: 120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)