Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_G07
         (864 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436...    47   2e-05
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336...    29   4.8  
06_03_0905 + 25843547-25844314                                         29   6.3  

>11_06_0628 -
           25643006-25643123,25643314-25643471,25643559-25643687,
           25644378-25644451,25644771-25644798
          Length = 168

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 27/91 (29%), Positives = 45/91 (49%)
 Frame = +2

Query: 395 DKKSYTLYLKELYEKISSKIGREGA*PS*SI*NKHEQSNERHPRAGLRNFSFFTGESMDC 574
           DKK +  ++K   + +S+K+  E          K+ +   ++    L++  FF GESM  
Sbjct: 83  DKKQFVTFMKRYIKNLSAKLDAEKQEEF----KKNIEGATKYLLGKLKDLQFFVGESMHD 138

Query: 575 DGMVAMMEYRDFDGTQIPIMMFFKHGLEEEK 667
           DG +    Y+  DG   P  ++F HGL+E K
Sbjct: 139 DGGLVFAYYK--DGATDPTFLYFSHGLKEVK 167


>01_05_0078 +
           17931998-17932062,17933320-17933416,17933506-17933601,
           17933957-17933988,17935143-17935595,17935831-17935975,
           17936058-17936159,17937798-17937890,17939448-17939489,
           17940092-17940202,17940446-17940517,17940596-17940714,
           17940981-17941044,17941133-17942782
          Length = 1046

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 651 PCL-KNIMIGICVPSKSLYSIMATMPSQSMDSPVKKLKF 538
           PCL K+   GI  P+K    ++ TMPS S  + + +  F
Sbjct: 200 PCLLKDASTGITKPAKEQGKLLVTMPSSSTSTKIPQSSF 238


>06_03_0905 + 25843547-25844314
          Length = 255

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 330 PSPCPRQPLQPKDXNPRAGEHPVRAAPTDR 241
           PSP P  P  PK+  PR  + P   +P  R
Sbjct: 46  PSPSPGHPKGPKNPTPRPPKGPTYPSPVTR 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,288,516
Number of Sequences: 37544
Number of extensions: 265023
Number of successful extensions: 796
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)