Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_G07
         (864 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-10|CAB02099.1|  181|Caenorhabditis elegans Hypothetical p...    45   6e-05
AF101316-3|AAC69232.2|  508|Caenorhabditis elegans Hypothetical ...    29   3.2  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    28   7.5  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    28   7.5  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    28   7.5  

>Z79754-10|CAB02099.1|  181|Caenorhabditis elegans Hypothetical
           protein F25H2.11 protein.
          Length = 181

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
 Frame = +3

Query: 243 GRLVPRAXGALXLAGFXPSAE--AADXGTDSAVERGVDIVLKPQ-AXRNITPSVTRNPTH 413
           G+ V R  G + LAG  PSAE  A D G+D  VERG+DIVL  +    N     +    +
Sbjct: 32  GKHVVRKEGEIVLAGSNPSAEEGAEDDGSDEHVERGIDIVLNHKLVEMNCYEDASMFKAY 91

Query: 414 CTSKNYMKKLVAKLEEKAPDQVEV 485
              K +MK ++  +E+   D+ +V
Sbjct: 92  I--KKFMKNVIDHMEKNNRDKADV 113



 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
 Frame = +2

Query: 536 RNFSFFTGESMDC---DGMVAMMEYRDFDGTQIPIMMFFKHGLEEEK 667
           +N +FF GE       +G VA++EYRD DGT++P +M  K  + EEK
Sbjct: 134 KNLAFFIGERAAEGAENGQVAIIEYRDVDGTEVPTLMLVKEAIIEEK 180


>AF101316-3|AAC69232.2|  508|Caenorhabditis elegans Hypothetical
           protein F52F10.2 protein.
          Length = 508

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 506 FVHVCFKYFNLVRRLLFQFCY*FFHI 429
           F+++C +Y    RR L  FCY  F I
Sbjct: 137 FIYLCIEYLPTGRRYLMMFCYILFDI 162


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 330 PSPCPRQPLQPKDXNPRAGEHPVRAAPTDRALR 232
           P P PRQ  Q  + +P  G  P  + PT R  R
Sbjct: 329 PPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPR 361


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 330 PSPCPRQPLQPKDXNPRAGEHPVRAAPTDRALR 232
           P P PRQ  Q  + +P  G  P  + PT R  R
Sbjct: 350 PPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPR 382


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 330 PSPCPRQPLQPKDXNPRAGEHPVRAAPTDRALR 232
           P P PRQ  Q  + +P  G  P  + PT R  R
Sbjct: 335 PPPPPRQKRQAPERSPPTGSPPTGSPPTGRPPR 367


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,115,381
Number of Sequences: 27780
Number of extensions: 234173
Number of successful extensions: 607
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)