Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_G04
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    28   1.5  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    28   2.0  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   4.6  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    26   8.0  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 785 YNKVGVPQGSILGPXLFIIYI 723
           Y+ VG PQGSI+ P L  IY+
Sbjct: 416 YDIVGTPQGSIVSPILANIYL 436


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -3

Query: 414 IDITCSKINRFSYALWRLTKICNLKTALQAYHGYVASNIRYCIPLWGNSSHINRVF 247
           +DI CSKI+R     +R     ++K   +      AS   Y  P  G+++ I+ +F
Sbjct: 400 LDIGCSKIDRVQVEYFRRNPRVDIKEETKLNADQKASESFYSKPAEGSNNFISDIF 455


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 797 SSXXYNKVGVPQGSILGPXLFIIYIK 720
           +S    KVG+PQGSIL   L   Y++
Sbjct: 695 NSQYLQKVGIPQGSILSSFLCHFYME 720


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 447 NVDNQCSWNLHIDITCSKINRFSYALWRLTKICN 346
           N+DN C  +L ID+T S + + S ++  L +  N
Sbjct: 237 NIDNVCIESLSIDLTESSLRKASKSILSLEQKVN 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,907,294
Number of Sequences: 5004
Number of extensions: 55426
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)