Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_G04
         (866 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0457 + 10503801-10507358                                         29   3.6  
05_02_0074 - 6351819-6352073,6352601-6352648                           29   4.8  

>02_02_0457 + 10503801-10507358
          Length = 1185

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 429  SWNLHIDITCSKINRFSYALWRLTKI 352
            SWNL  DI C  +    ++LW +T I
Sbjct: 940  SWNLLGDIECCSLTSLVFSLWHVTSI 965


>05_02_0074 - 6351819-6352073,6352601-6352648
          Length = 100

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -3

Query: 402 CSKINRFSYALWRLTKICNLKTALQAYHG----YVASNIRYCIPL 280
           C + N      + L+ +C+ + AL  +      Y  SN RYCIPL
Sbjct: 47  CKRCNGLLKKAYELSMLCDAEVALIVFSSRGRLYEYSNNRYCIPL 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,274,109
Number of Sequences: 37544
Number of extensions: 306180
Number of successful extensions: 500
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)