Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_G02
         (1070 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    28   1.9  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   3.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   5.9  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +2

Query: 974  PNXLPPXPXGXPXSPXSXPHTXAXXPPXP 1060
            P   PP P   P SP S P   +  PP P
Sbjct: 140  PTSAPPRPSIPPPSPASAPPIPSKAPPIP 168


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 305

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/38 (39%), Positives = 15/38 (39%)
 Frame = -1

Query: 1070 GGGGGXEXCXXGCVXAXGGKXGXRGGXAGAGWXXXGGG 957
            GG GG      G     GG  G RGG  G G     GG
Sbjct: 9    GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGG 46


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 986  PPXPXGXPXSPXSXPHTXAXXPPXPLP 1066
            PP P G P +P   P   A  PP P P
Sbjct: 457  PPLPAGMPAAPPLPPAAPA-PPPAPAP 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,453,730
Number of Sequences: 5004
Number of extensions: 9774
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 561795324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)