Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_G01
         (857 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623...    38   0.008
08_02_0888 - 22284554-22285144                                         29   6.3  
09_03_0040 + 11816056-11819069,11819837-11820428                       28   8.3  
02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178           28   8.3  

>08_01_0706 -
           6235817-6235988,6236028-6236338,6236421-6236627,
           6236718-6236889,6236994-6237249,6238015-6238073,
           6238693-6238782,6238869-6239013,6239598-6239712,
           6240690-6240701
          Length = 512

 Score = 38.3 bits (85), Expect = 0.008
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
 Frame = +2

Query: 341 NTGXSDPRFLVGGNGKVYEGSGWLHVGAXTYGYXSRSXGVAFIGNFNTDEPS----GAML 508
           NTG S     +GG G+++ G  W       + Y S S  +A  G  + ++PS     + L
Sbjct: 385 NTGYSFVNCSIGGTGRIWLGRAWRPYSTVVFAYTSMSDIIASEGWNDWNDPSRDQYASSL 444

Query: 509 EALRSLLRCXVERGXLAGDYRAVAXRQXIASESP 610
            ++ S++ C  +R    G+YR       ++   P
Sbjct: 445 YSV-SIVTCMTKRTVFYGEYRCTGDGANLSDRVP 477


>08_02_0888 - 22284554-22285144
          Length = 196

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = -3

Query: 471 PMNATPXDLEXYP*VXAPTCSQPEPSYTLPLPPTRKRGSXXPVLQGLH 328
           P      ++E  P    P   QPEPS   P  P   +G+  PV+   H
Sbjct: 14  PTKLAAGEIEAVP--EQPMPDQPEPSQPEPSQPEESKGADVPVMVRTH 59


>09_03_0040 + 11816056-11819069,11819837-11820428
          Length = 1201

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -3

Query: 531 RSSDRSASSIAPLGSSVLKLPMNATP 454
           R   R+AS++A  G+S+ +LP+ ATP
Sbjct: 301 RDCGRAASTLAESGASMEELPLEATP 326


>02_01_0409 - 2978104-2978642,2979106-2979931,2980112-2982178
          Length = 1143

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 99  PPPLGSCTRARSQLASHXNXS 161
           PP LGSC+R R   A H N S
Sbjct: 221 PPELGSCSRLRVLKAGHNNLS 241


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,549,303
Number of Sequences: 37544
Number of extensions: 268654
Number of successful extensions: 988
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)