Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_F21
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...   146   4e-36
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...   146   4e-36
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    33   0.039

>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score =  146 bits (354), Expect = 4e-36
 Identities = 72/95 (75%), Positives = 79/95 (83%)
 Frame = +3

Query: 309 LPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENP 488
           LPH+AGR+  KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NP
Sbjct: 48  LPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNP 107

Query: 489 LXVLVTXIIXSGXREDSXRIGRAGTVRRQAVDVYP 593
           L VLV  +   G REDS RIG AGTVRRQAVDV P
Sbjct: 108 LQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSP 142



 Score = 35.1 bits (77), Expect = 0.013
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +1

Query: 607 QXIWXLCTGXXEAXXRNIKXIAECVXDELINXX*GLFXS*AXKK 738
           Q +  +  G  EA  RN+K I+EC+ +E+IN   G   S A KK
Sbjct: 148 QALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKK 191


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score =  146 bits (354), Expect = 4e-36
 Identities = 72/95 (75%), Positives = 79/95 (83%)
 Frame = +3

Query: 309 LPHSAGRYAHKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENP 488
           LPH+AGR+  KRFRKA+C IVERLTNSLMM+GRNNGKKL+A RIVKHAFEII LLT +NP
Sbjct: 48  LPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNP 107

Query: 489 LXVLVTXIIXSGXREDSXRIGRAGTVRRQAVDVYP 593
           L VLV  +   G REDS RIG AGTVRRQAVDV P
Sbjct: 108 LQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSP 142



 Score = 35.1 bits (77), Expect = 0.013
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +1

Query: 607 QXIWXLCTGXXEAXXRNIKXIAECVXDELINXX*GLFXS*AXKK 738
           Q +  +  G  EA  RN+K I+EC+ +E+IN   G   S A KK
Sbjct: 148 QALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKK 191


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 33.5 bits (73), Expect = 0.039
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +3

Query: 369 VERLTNSLMMHGRNNGKKLMAVRIVKHAFEIIHLLTGENPLXVL 500
           V+ L N +M     +GKK  A +IV  A  II   TGENP+ VL
Sbjct: 126 VQHLVNLIM----RDGKKAKAEKIVATALSIIQKETGENPIDVL 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,086,638
Number of Sequences: 5004
Number of extensions: 31077
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)