Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP17_F_F21
         (862 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   4.8  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   6.3  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   6.3  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   6.3  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   6.3  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   6.3  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   6.3  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 288 LTEMXXLQRHIRDLHXR 238
           LT +  L+RHI+++H R
Sbjct: 12  LTSLTRLRRHIQNVHTR 28


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 339 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 440
           +R R  +  I+  L+N  + +  NN KKL    I
Sbjct: 72  ERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 339 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 440
           +R R  +  I+  L+N  + +  NN KKL    I
Sbjct: 72  ERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 339 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 440
           +R R  +  I+  L+N  + +  NN KKL    I
Sbjct: 72  ERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 339 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 440
           +R R  +  I+  L+N  + +  NN KKL    I
Sbjct: 72  ERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 105


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 180 LXXKPPTFLKSSFSAXWSCYXCASL*YV 263
           L  K  T+  +S    WS + C SL Y+
Sbjct: 383 LDKKQYTWRHTSVLIGWSAFLCISLVYI 410


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 339 KRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI 440
           +R R  +  I+  L+N  + +  NN KKL    I
Sbjct: 305 ERERSKEPKIISSLSNKTIHNNNNNYKKLQYYNI 338


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,961
Number of Sequences: 438
Number of extensions: 2165
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)