Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP17_F_F18
(893 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0570 - 4231100-4232560 31 0.94
12_02_1174 - 26696869-26698191 29 5.0
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 5.0
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 27 5.5
07_03_1160 - 24430240-24431268 29 6.6
03_06_0471 + 34169562-34169892,34170121-34170347 29 6.6
02_05_0686 - 30900748-30902167,30903442-30904742 29 6.6
12_02_0299 - 17051570-17052474,17053542-17053755 28 8.7
>01_01_0570 - 4231100-4232560
Length = 486
Score = 31.5 bits (68), Expect = 0.94
Identities = 21/71 (29%), Positives = 24/71 (33%)
Frame = -1
Query: 887 GEGXQVHGAXGXGTXXRNXSPXXXGXSKGGGRDXXXGTAXEXAPGLWEXDSKGXRXGSGX 708
G G V G G G+ + G S G G G G S+G R GSG
Sbjct: 387 GGGLGVGGGTGGGSGANEGAGMGGGISSGAGAGGGLGVGGGGGAGGGIGASRGARGGSGA 446
Query: 707 XXXXGXXGEEG 675
G G G
Sbjct: 447 GGGAGMGGGVG 457
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.1 bits (62), Expect = 5.0
Identities = 21/73 (28%), Positives = 22/73 (30%)
Frame = +2
Query: 668 PXXLLPPXXXPPXPXHYPXGYPWSQXPTDXXXXXXXXXXSGXXPPLCXPRXXLDXCFFXX 847
P L PP PP P P P P PP PR D
Sbjct: 182 PPSLQPPSPPPPPPTRPPSVKPPVVQPKPQPPPTLPPPSPPPPPPTVPPRTPGDT---PA 238
Query: 848 SPXPXPRGPXPPP 886
P P+ P PPP
Sbjct: 239 VVEPKPQPPPPPP 251
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.1 bits (62), Expect = 5.0
Identities = 24/91 (26%), Positives = 26/91 (28%), Gaps = 6/91 (6%)
Frame = +2
Query: 635 KXXXPXXXAGXPXXLLPPXXXPPXPXHYPXGYPWSQXPTDXXXXXXXXXXSGXXPPLCXP 814
K P A P PP PP + P P P + PP P
Sbjct: 533 KLPSPSPTAAAPPP--PPPPPPPPSGNKPAFSPPPPPPPPPPPPLPQSNYASSQPPPPPP 590
Query: 815 RXXLDXCFFXXSPXPXPRGP------XPPPP 889
L C P P P P PPPP
Sbjct: 591 PPPLPNCLVPSPPPPPPPPPILPNRSVPPPP 621
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 26.6 bits (56), Expect(2) = 5.5
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = +2
Query: 851 PXPXPRGPXPPPP 889
P P PR P PPPP
Sbjct: 367 PPPPPRPPPPPPP 379
Score = 20.6 bits (41), Expect(2) = 5.5
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = +2
Query: 677 LLPPXXXPPXPXHYPXGYPWSQXP 748
L+PP PP P P P + P
Sbjct: 351 LMPPPPPPPPPPPPPPPPPPPRPP 374
>07_03_1160 - 24430240-24431268
Length = 342
Score = 28.7 bits (61), Expect = 6.6
Identities = 12/46 (26%), Positives = 18/46 (39%)
Frame = +1
Query: 667 PXXPSSPXXPSXXXXPLPXRXPLESXSHRPGAXSXAVPXXXSRPPP 804
P P P P P P P+ P + + +VP ++P P
Sbjct: 175 PPKPDQPPQPIPNGPPKPDMLPMPKPDGSPNSYAPSVPDQSTQPNP 220
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 28.7 bits (61), Expect = 6.6
Identities = 16/49 (32%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Frame = +2
Query: 662 GXPXXLLPPXXXPPXPXHYPXG-YPWSQXPTDXXXXXXXXXXSGXXPPL 805
G P PP PP YP G YP S P G PP+
Sbjct: 61 GYPGAQYPPSGYPPSQGGYPPGAYPPSGYPQQPGYPPAGYPGHGHGPPM 109
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.7 bits (61), Expect = 6.6
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 851 PXPXPRGPXPPPP 889
P P P+GP PPPP
Sbjct: 337 PPPPPKGPPPPPP 349
Score = 28.7 bits (61), Expect = 6.6
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = +2
Query: 851 PXPXPRGPXPPPP 889
P P P+GP PPPP
Sbjct: 355 PPPPPKGPSPPPP 367
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 28.3 bits (60), Expect = 8.7
Identities = 20/72 (27%), Positives = 22/72 (30%), Gaps = 4/72 (5%)
Frame = +2
Query: 686 PXXXPPXPXHYPXGYPWSQXPTDXXXXXXXXXXSGXXP---PLCXPRXXLDXC-FFXXSP 853
P PP P P +P+ P P P P F SP
Sbjct: 261 PFPLPPWPWAPPPAFPFPHLPPIFSPPSPPPPPPPAFPFPFPQLPPLPHFPPLPSFYPSP 320
Query: 854 XPXPRGPXPPPP 889
P P P PPPP
Sbjct: 321 PPPPPPPPPPPP 332
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,241,258
Number of Sequences: 37544
Number of extensions: 220175
Number of successful extensions: 1468
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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